Pairwise Alignments

Query, 408 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit F from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., NADH:ubiquinone oxidoreductase, Na translocating, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  636 bits (1640), Expect = 0.0
 Identities = 306/401 (76%), Positives = 347/401 (86%), Gaps = 2/401 (0%)

Query: 7   GVVMFTLIILALVLVILFAKSKLVPTGDITISINGDPEKAIVTQPGGKLLTALAGAGVFV 66
           G+ MFTL++  LV+VIL AK KLV TG+ITI IN D EK+I    G KLL ALA   +F+
Sbjct: 6   GIGMFTLVVCLLVIVILIAKKKLVTTGEITIGINDDAEKSIKVAAGDKLLGALASKNIFI 65

Query: 67  SSACGGGGSCGQCRVKIKSGGGDILPTELDHISKGEAREGERLACQVAVKADMDLELPEE 126
            SACGGGG+CGQCRVK+KSGGGDILPTEL HI+K EA+EG RLACQVAVK DM+LEL EE
Sbjct: 66  PSACGGGGTCGQCRVKVKSGGGDILPTELGHITKKEAKEGCRLACQVAVKTDMELELEEE 125

Query: 127 IFGVKKWECTVISNDNKATFIKELKLAIPDGESVPFRAGGYIQIEAPAHHVKYADFDVPE 186
           IFGVKKW+C VISNDNKATFIKEL L +P+GE V F+AGGYIQIEAPAH VKYADFD+P 
Sbjct: 126 IFGVKKWQCEVISNDNKATFIKELLLKLPEGEDVHFKAGGYIQIEAPAHVVKYADFDIPA 185

Query: 187 KYRGDWDKFNLFRYESKVDEPIIRAYSMANYPEEFGIIMLNVRIATPPPNNPNVPPGQMS 246
           KYR DW+K+ LF   S V+E ++RAYSMANYP+E G IMLNVRIATPP  + NVPPG+MS
Sbjct: 186 KYRDDWEKYGLFDLVSTVNEDVLRAYSMANYPDEKGRIMLNVRIATPP--SANVPPGKMS 243

Query: 247 SYIWSLKAGDKCTISGPFGEFFAKDTDAEMVFIGGGAGMAPMRSHIFDQLKRLKSKRKMS 306
           SYI++LKAGDK TISGPFGEFF KDTDAEMVFIGGGAGMAPMRSHIFDQLK  K+KRKMS
Sbjct: 244 SYIFNLKAGDKVTISGPFGEFFVKDTDAEMVFIGGGAGMAPMRSHIFDQLKSKKTKRKMS 303

Query: 307 YWYGARSKREMFYVEDFDGLAAENDNFVWHCALSDPQPEDNWTGYTGFIHNVLYENYLKD 366
           +WYGARS RE+FY +DFD LAAENDNFVWH ALS+P PEDNWTGYTGFIHNVLYENYLK+
Sbjct: 304 FWYGARSTREVFYQQDFDTLAAENDNFVWHVALSEPLPEDNWTGYTGFIHNVLYENYLKN 363

Query: 367 HEAPEDCEYYMCGPPMMNAAVINMLKNLGVEEENILLDDFG 407
           H+APEDCE+YMCGPP+MN++VI ML++LGVE ENILLDDFG
Sbjct: 364 HKAPEDCEFYMCGPPIMNSSVIKMLESLGVEPENILLDDFG 404