Pairwise Alignments

Query, 408 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit F from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., Na+-translocating NADH-quinone reductase subunit (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  393 bits (1009), Expect = e-114
 Identities = 211/424 (49%), Positives = 284/424 (66%), Gaps = 18/424 (4%)

Query: 1   MSTIIFGVVMFTLIILALVLVILFAKSKLVPTGDITISINGDPEKAIVTQPGGKLLTALA 60
           M+ I+  + +F ++IL LV+++L AK  LVP+G++ ++ING  E  +  + G  LL  LA
Sbjct: 1   MNLILSSIGVFLVVILLLVVILLVAKKFLVPSGNVKLTING--ETGLEVESGSTLLNTLA 58

Query: 61  GAGVFVSSACGGGGSCGQCRVKIKSGGGDILPTELDHISKGEAREGERLACQVAVKADMD 120
             GVF+SSACGG GSCGQC+ ++  GGG+ILP+E+ H S+ + ++  RL CQV VK+DM 
Sbjct: 59  VNGVFLSSACGGKGSCGQCKCQVLEGGGEILPSEVPHFSRKQQQDHWRLGCQVKVKSDMA 118

Query: 121 LELPEEIFGVKKWECTVISNDNKATFIKELKLAIPDGESVPFRAGGYIQIEAPAHHVKY- 179
           +++ E + GVK+WEC VISN N ATFIKE  +A+P GE + F  G Y QI+ P   + Y 
Sbjct: 119 IKIDESVLGVKEWECEVISNKNVATFIKEFIVALPKGEHMDFIPGSYAQIKIPKFSMDYD 178

Query: 180 ADFD---VPEKYRGDWDKFNLFRYESKVDEPIIRAYSMANYPEEFGIIMLNVRIATPP-- 234
            D D   + E+Y   W+KF L   + K +E  IRAYSMANYP E   IML VRIATPP  
Sbjct: 179 KDIDKSLIGEEYLPAWEKFGLLGLKCKNEEETIRAYSMANYPAEGDRIMLTVRIATPPFK 238

Query: 235 -----PNNPNVPPGQMSSYIWSLKAGDKCTISGPFGEFF-AKDTDAEMVFIGGGAGMAPM 288
                P   +V PG  SSYI++LK GDK  +SGP+G+F    D++ EM++IGGGAGMAP+
Sbjct: 239 PKEQGPGFMDVMPGIASSYIFTLKPGDKVIMSGPYGDFHPIFDSNKEMMWIGGGAGMAPL 298

Query: 289 RSHIFDQLKRL-KSKRKMSYWYGARSKREMFYVEDFDGLAAENDNFVWHCALSDPQPEDN 347
           R+ I    K L  + RKMSY+YGAR+  E+FY+EDF  +  +  NF +H AL  P P  +
Sbjct: 299 RAQIMHLTKTLHTTDRKMSYFYGARALNEVFYLEDFLQIEKDFPNFTFHLALDRPDPAAD 358

Query: 348 WTG--YT-GFIHNVLYENYLKDHEAPEDCEYYMCGPPMMNAAVINMLKNLGVEEENILLD 404
             G  YT GF+HNV+YE YLK+HEAPED EYYMCGP  M+ AV  ML +LGV  +N++ D
Sbjct: 359 AAGVKYTPGFVHNVIYETYLKNHEAPEDIEYYMCGPGPMSKAVEKMLDDLGVPAQNLMFD 418

Query: 405 DFGG 408
           +FGG
Sbjct: 419 NFGG 422