Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 390 a.a., DNA polymerase IV (EC 2.7.7.7) from Pseudomonas fluorescens FW300-N2E2

 Score =  309 bits (791), Expect = 9e-89
 Identities = 166/338 (49%), Positives = 220/338 (65%), Gaps = 2/338 (0%)

Query: 6   RKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQ 65
           RKIIHVD DCF+AA+EMRD+P      LAVGG   +RGVI+TCNY+AR +GVRSAM +  
Sbjct: 41  RKIIHVDCDCFYAAIEMRDDPRLAGKPLAVGGSADRRGVIATCNYEARAYGVRSAMSSGH 100

Query: 66  ALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSATL 125
           ALKLCP L +V  RM  Y+  S++I TIF  YT LIEPLSLDEAYLDVS S  + GSAT 
Sbjct: 101 ALKLCPDLTIVKPRMDAYREASKEIHTIFSDYTDLIEPLSLDEAYLDVSASAHFGGSATR 160

Query: 126 IAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEKI 185
           IAQ IRR +  +L++T SAGVAP KFLAK+ASD  KP+GL+V+TPD+V++ V +LP+ K+
Sbjct: 161 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVSALPVSKL 220

Query: 186 PGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERERK 245
            GVGKV  +KL++ G+     +R+ D   L+ +FG  G  LW  + GIDER V  +  R+
Sbjct: 221 HGVGKVTADKLNRLGIVDCLQLRQWDKLALVREFGSFGERLWSLARGIDERLVHNDSRRQ 280

Query: 246 SVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQTTI 305
           S+ VE T+  ++     C   + + L   L  R++R        K  +KVKF DF QTT+
Sbjct: 281 SISVENTYDVDLPDLVSCLDKLPE-LMETLSGRMARIDSSYRPGKPFVKVKFHDFTQTTL 339

Query: 306 EHVHPALELDYFHELLEQVLTRQQGREIRLLGLSVMLK 343
           E      +L  +  LL Q   R  G+ +RLLG+ V L+
Sbjct: 340 EQAGAGRDLGSYQLLLTQAFNR-GGKPVRLLGIGVRLE 376