Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., DNA-directed DNA polymerase from Pseudomonas syringae pv. syringae B728a

 Score = 57.0 bits (136), Expect = 9e-13
 Identities = 66/295 (22%), Positives = 123/295 (41%), Gaps = 18/295 (6%)

Query: 11  VDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQALKLC 70
           +D +CF+A+ E    P   +  + V  +    G +   +Y A+ F V+   P  Q   + 
Sbjct: 11  IDCNCFYASCERAFRPDLAKTPIVVLSNND--GCVIARSYDAKPF-VKMGAPYFQIKDVL 67

Query: 71  PQLHVVP--GRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSATLIAQ 128
            Q  V+      ++Y  +S+++ TI +      E  S+DEA+ D+   T   G  T   +
Sbjct: 68  RQNGVIAFSSNYALYGDMSERVMTIIESMVPASEVYSIDEAFADL---TGIPGDMTEFGR 124

Query: 129 AIRRDIWQELNLTASAGVAPIKFLAKVASD-----LNKPDGLY-VVTPDKVQEMVDSLPL 182
            IR  I +   +    G+ P K LAK+A+      L +  G+  +    K   ++ +  +
Sbjct: 125 RIRSKILKCTGIPVGVGIGPTKTLAKLANHTAKRLLAQTGGVVDICDLHKRNWVLRNTCV 184

Query: 183 EKIPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREV-VTE 241
            ++ GVGK     L    +    D+  AD R L  +F  +     ++  G    E+   +
Sbjct: 185 SEVWGVGKKMKAHLEAMNIRSAMDLANADARTLRTKFSVVIEKTARELAGTSCLEMSEAD 244

Query: 242 RERKSVGVEYTFSQNISTFQ---ECWQVIEQKLYPELDARLSRAHPQRGIIKQGI 293
             ++ +     F Q ++T +   E      Q+   +L A+ S     R  I+ G+
Sbjct: 245 PPKQEICSSRMFGQRLTTIEPIKEAVATYTQRAAEKLRAQNSLCKKMRVSIRTGM 299