Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., DNA-directed DNA polymerase from Pseudomonas syringae pv. syringae B728a

 Score = 56.2 bits (134), Expect = 2e-12
 Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 14/227 (6%)

Query: 1   MQDRIRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSA 60
           M+ R      +D +CF+A+ E    P   +  + V  +    G +   +Y A+ F V+  
Sbjct: 1   MEKREAVFALIDCNCFYASCERVFRPDLEKTPIVVLSNND--GCVIARSYDAKPF-VKMG 57

Query: 61  MPTAQALKLCPQ--LHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTA 118
            P  Q  ++  +  + V     ++Y  +S+++ +I +      E  S+DEA+ D+   T 
Sbjct: 58  APYFQIREVLRRNGIKVFSSNYALYGDMSERVMSIIESMVPASEVYSIDEAFADL---TG 114

Query: 119 YQGSATLIAQAIRRDIWQELNLTASAGVAPIKFLAKVASD-----LNKPDGLYVVTPDKV 173
             G  T   + IR +I +   +    G+ P K LAK+A+      L+   G+  +     
Sbjct: 115 VPGDLTAFGRRIRANILKCTGIPVGVGIGPTKTLAKLANHTAKRLLSHTGGVVDICDLHN 174

Query: 174 QEMV-DSLPLEKIPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQF 219
           +  V  +  + ++ GVGK     L    +    D+  AD R L  +F
Sbjct: 175 RNWVLRNTAVSEVWGVGKKMNAHLEAMNIRTAMDLATADPRTLRERF 221