Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., DNA-directed DNA polymerase from Pseudomonas syringae pv. syringae B728a

 Score =  318 bits (814), Expect = 2e-91
 Identities = 170/337 (50%), Positives = 223/337 (66%), Gaps = 2/337 (0%)

Query: 6   RKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQ 65
           RKIIH+D DCF+AA+EMRD P      LAVGG  ++RGVI+TCNY+AR +GVRSAM +  
Sbjct: 4   RKIIHIDCDCFYAAIEMRDEPDLAGKPLAVGGSAERRGVIATCNYEARAYGVRSAMSSRH 63

Query: 66  ALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSATL 125
           ALKLCP L +V  RM  YK  S++I TIF+ YT LIEPLSLDEA+LDVSE+  + GSAT 
Sbjct: 64  ALKLCPDLTIVKPRMDAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVSEAGHFSGSATR 123

Query: 126 IAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEKI 185
           IAQ IRR +  +L++T SAGVAP KFLAK+ASD  KP+GL+V+TPD+V+E V SLP+ K+
Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEEFVASLPVTKL 183

Query: 186 PGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERERK 245
            GVGKV  +KL + G+   AD+R      L+ +FG  G  LW  +HGID+R V  +  R+
Sbjct: 184 HGVGKVTADKLGRLGIVDCADLRSRSKLALVREFGSFGERLWSLAHGIDDRPVQNDSRRQ 243

Query: 246 SVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQTTI 305
           SV VE T+  ++     C + +   L   L  R++R   Q    K  +KVKF DF QTT+
Sbjct: 244 SVSVENTYDTDLPDLAACLEKLPD-LLETLSGRMARMEGQYRPGKPFVKVKFHDFTQTTL 302

Query: 306 EHVHPALELDYFHELLEQVLTRQQGREIRLLGLSVML 342
           E      +L  + +LL Q   R  G+ +RLLG+ V L
Sbjct: 303 EQSGAGRDLGSYEQLLAQAFAR-GGKPVRLLGIGVRL 338