Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., DNA-directed DNA polymerase from Synechococcus elongatus PCC 7942

 Score = 77.0 bits (188), Expect = 8e-19
 Identities = 63/263 (23%), Positives = 125/263 (47%), Gaps = 13/263 (4%)

Query: 11  VDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQALKLC 70
           +D + F+ + E   +P  +   + V  +    G +   + +A+  G+   +P  +   L 
Sbjct: 5   IDCNNFYVSCERVFDPKLQGQPVVVLSNND--GCVIARSAEAKALGIPMGIPFFKVKDLI 62

Query: 71  PQ--LHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSATLIAQ 128
            Q  + V     ++Y  +SQ++          +E  S+DEA+LD S    +Q       Q
Sbjct: 63  SQHQIQVFSSNYALYGDMSQRVMQTLATLCPDLEVYSIDEAFLDFS---GFQAQPLQQGQ 119

Query: 129 AIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPD-GLYVVTPDKVQEMVDSLPLEKIPG 187
            IR+ + Q   +  S G+A  K LAKVA+ L K + G++V++P KVQ ++ +LP+E++ G
Sbjct: 120 LIRQTVGQWTGIPVSIGIAATKVLAKVANKLAKQNGGVFVLSPSKVQAVLMTLPVEEVWG 179

Query: 188 VGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHG---IDEREVVTERER 244
           +     ++L    +   A+++  +   +  QF  +   + ++  G   +    +V  ++ 
Sbjct: 180 ISSRWGQRLRALNISTAAELQATNLNLMRQQFNIVLERIVRELRGESCLPLESIVNPQQ- 238

Query: 245 KSVGVEYTFSQNISTFQECWQVI 267
            S+ V  +F Q I+T  E  Q +
Sbjct: 239 -SLVVSRSFGQPITTLPELKQAV 260