Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 430 a.a., DNA polymerase IV from Sinorhizobium meliloti 1021

 Score =  176 bits (446), Expect = 1e-48
 Identities = 119/346 (34%), Positives = 191/346 (55%), Gaps = 13/346 (3%)

Query: 8   IIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQAL 67
           + H+D D F+A+VE RDNP   +  + +GG +  RGV+ST  Y AR  GVRSAMP  +AL
Sbjct: 45  LAHIDCDAFYASVEKRDNPELADKPVIIGGGK--RGVVSTACYIARIHGVRSAMPMFKAL 102

Query: 68  KLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVS--ESTAYQGSATL 125
           + CPQ  V+   M  Y  V ++++ + Q  T L++PLS+DEA+LD+S  E   +   A  
Sbjct: 103 EACPQAVVIKPDMEKYVRVGREVRAMMQELTPLVQPLSIDEAFLDLSGTERLHHDPPART 162

Query: 126 IAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEKI 185
           +A+  +R + QE+ +T S G++  KFLAKVASDL KP G  V+   +  + + + P+  I
Sbjct: 163 LARFAKR-VEQEIGITVSVGLSYCKFLAKVASDLQKPRGFSVIGQAEAADFLKAKPVTLI 221

Query: 186 PGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERERK 245
            GVGK     L + G+     ++  +   L+ ++G +G  L++ S G+DER V  + E K
Sbjct: 222 WGVGKAFAATLERDGIRAIGQLQTMEEADLMRRYGTMGRRLYRLSRGLDERSVEIDGEAK 281

Query: 246 SVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQTTI 305
           SV  E TF+ +++  QE      + L  ++  RL ++      +   +K+K ADF+  T 
Sbjct: 282 SVSSETTFNDDLAR-QEDLVAHLRGLSEQVAFRLRKSALAGQTVV--LKLKTADFKTRTR 338

Query: 306 EH--VHPALELDYFHELLEQVLTRQ-QGREIRLLGLSV--MLKPEL 346
                 P    D       Q+L ++  G + RL+G+ V  ++ P+L
Sbjct: 339 NRRLESPTRLADRIFRTGLQLLEKEVDGTKYRLIGIGVSDLVDPDL 384