Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., DNA polymerase IV (RefSeq) from Shewanella amazonensis SB2B

 Score =  376 bits (966), Expect = e-109
 Identities = 202/338 (59%), Positives = 247/338 (73%), Gaps = 1/338 (0%)

Query: 5   IRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTA 64
           +RKIIH+DMDC+FAAVEMRD P YR   LAVGG   +RGVISTCNY+AR FGVRSAM +A
Sbjct: 1   MRKIIHIDMDCYFAAVEMRDFPQYRGKPLAVGGSSDRRGVISTCNYEARAFGVRSAMASA 60

Query: 65  QALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSAT 124
            ALKLCP L +VPGRM VYK+VSQQI+ IF RYTSLIEPLSLDEAYLDVS+ + YQGSAT
Sbjct: 61  YALKLCPNLILVPGRMEVYKAVSQQIREIFSRYTSLIEPLSLDEAYLDVSDCSLYQGSAT 120

Query: 125 LIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184
            IA+AIR DI++E  LTASAGV+PIKF+AKVASDLNKP+G YVV+PD +   V +L L K
Sbjct: 121 RIAEAIRSDIFKETGLTASAGVSPIKFVAKVASDLNKPNGQYVVSPDTLMHFVRALSLGK 180

Query: 185 IPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERER 244
           IPGVGKV  EKL+  GL   ADV++     L   FG+ GA L++++HG DER +V+ RER
Sbjct: 181 IPGVGKVTEEKLNALGLKTCADVQQVPQTLLTEHFGKFGAVLYERAHGRDERAIVSHRER 240

Query: 245 KSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQTT 304
           KSVGVE T  +++ T + C  V+   L PEL+ RL R+   R I K  +K+KF DF+QTT
Sbjct: 241 KSVGVETTLPKDLHTREACLDVL-SSLIPELNRRLGRSASGRRIHKLVVKLKFDDFRQTT 299

Query: 305 IEHVHPALELDYFHELLEQVLTRQQGREIRLLGLSVML 342
           IE       +  F  LL Q   R +GR IRL+G++  L
Sbjct: 300 IESRAEEPSVRLFESLLSQAFVRAEGRGIRLVGIAAGL 337