Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., DNA-directed DNA polymerase (NCBI) from Rhodospirillum rubrum S1H

 Score =  191 bits (485), Expect = 3e-53
 Identities = 121/340 (35%), Positives = 191/340 (56%), Gaps = 14/340 (4%)

Query: 8   IIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQAL 67
           I H+D D F+A+VE RDNP+ R+  L VG H   RGV +T  Y AR+FG RSAMP  + L
Sbjct: 38  IAHIDCDAFYASVEKRDNPSLRDRPLIVG-HPGGRGVATTACYIARRFGARSAMPMFKCL 96

Query: 68  KLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSATLIA 127
           +LCP+  V+P  M+ YK+VS Q++ I    T  +EPLSLDEAYLD+SE          ++
Sbjct: 97  ELCPEAVVIPPDMAKYKAVSAQVRAIMLEATHRLEPLSLDEAYLDLSEGEHRFARPPAVS 156

Query: 128 QA-IRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEKIP 186
            A I R + +E+ +T S G++  +FLAK+ASD+NKP G  V+   +   ++  +P++++ 
Sbjct: 157 LATIARRVEREIGITVSIGLSSNRFLAKLASDMNKPQGFTVIDEAEAPALLAPMPVKRLH 216

Query: 187 GVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERERKS 246
           GVG     +L + GL+   D++      LL +FG++G +L   + G   R +  +RE KS
Sbjct: 217 GVGAATERRLAELGLHTIGDLQGRPEADLLARFGKIGRALHAHAWGRGGRTISPDRETKS 276

Query: 247 VGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGI--KVKFADFQQTT 304
           +  E TF +++S   +    + + L P L  R++RA  +  +    +  K+K  DF+  T
Sbjct: 277 ISAETTFERDLSRLPD----LARALGP-LSERVARALTRNALAGATVVLKLKTHDFRILT 331

Query: 305 IEHVH---PALELDYFHELLEQVLTRQ-QGREIRLLGLSV 340
             H     P    +       ++L R+  GR  RL+G+ +
Sbjct: 332 -RHARLGDPTARAEVIAGAARRLLERETDGRRFRLIGVGM 370