Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., DNA polymerase IV from Pedobacter sp. GW460-11-11-14-LB5

 Score =  170 bits (430), Expect = 8e-47
 Identities = 109/343 (31%), Positives = 180/343 (52%), Gaps = 12/343 (3%)

Query: 3   DRIRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMP 62
           D+ R+IIH+D D FF +VE+R NP      + +GG    RGV+++C+Y+AR++G+ SAMP
Sbjct: 2   DKERQIIHMDQDAFFVSVEIRKNPKLSGKPVIIGGGG-DRGVVASCSYEARQYGIHSAMP 60

Query: 63  TAQALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGS 122
              A  LCPQ   + G M  Y   S +I  +      L E  S+DE Y+D++    + G 
Sbjct: 61  GRTAKLLCPQAIFLKGDMEEYSKASHEITEVIADKVPLFEKASIDEHYIDMTGMDRFFGC 120

Query: 123 ATLIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPL 182
               A  +R+ I +E+ L  S G++  K +AK+A++ +KP G   VT  +++  +D L +
Sbjct: 121 MKF-ASELRQTIIREMGLPISFGLSINKTVAKIATNESKPSGEMQVTFPQLRPFLDPLAI 179

Query: 183 EKIPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTER 242
            KIPG+G    +KL + G+     + +   + +    G+ G SLW+K++GID   VV  R
Sbjct: 180 HKIPGIGHATYKKLSEMGVREILTLTQIPQQLMFKILGQHGLSLWQKANGIDLSPVVPYR 239

Query: 243 ERKSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQ 302
           ERKS+G + TF  +     +   +I   +   L  +L         I   + V++ +F+ 
Sbjct: 240 ERKSIGTQATFESDTMDMAKLKAII-TGMVTGLTFQLRNQKKLTACIT--VTVRYTNFET 296

Query: 303 TTIEHVHPALELDYF-----HELLEQVLTRQQGREIRLLGLSV 340
            T +   P   LD F     H L E+V  ++    +RL+G+ +
Sbjct: 297 VTQQERIPYTSLDSFLISKAHSLFEKVYAKRM--LLRLVGVKL 337