Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella loihica PV-4

 Score =  384 bits (987), Expect = e-111
 Identities = 201/341 (58%), Positives = 253/341 (74%), Gaps = 1/341 (0%)

Query: 5   IRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTA 64
           ++KIIHVDMDCFFAAVEMRD P  R   +AVGG   +RGVISTCNY+ARKFGVRSAM +A
Sbjct: 1   MKKIIHVDMDCFFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARKFGVRSAMASA 60

Query: 65  QALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSAT 124
            ALKLCP L +VPGRMSVYK VS QI+ +F RYT LIEPLSLDEAYLDVS+ T +QGSAT
Sbjct: 61  YALKLCPDLILVPGRMSVYKEVSAQIREVFARYTELIEPLSLDEAYLDVSDCTQHQGSAT 120

Query: 125 LIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184
           LIA+AIRR+I++   LTASAG+AP+KFLAK+ASDLNKP+G YV+TP  + E V +L L K
Sbjct: 121 LIAEAIRREIFEVTGLTASAGIAPVKFLAKIASDLNKPNGQYVITPQMIPEFVKTLALIK 180

Query: 185 IPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERER 244
           IPGVGKV   KL   GL   ADV+    + L+ +FG+ G  L+ ++ GID R +   RER
Sbjct: 181 IPGVGKVTAAKLETMGLITCADVQACSRQSLMERFGKFGGVLYDRAQGIDPRGISPHRER 240

Query: 245 KSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQTT 304
           KSVGVE T +++I T+++C Q +  +L  EL  R+SR+   R I KQ +K+KF DF+QTT
Sbjct: 241 KSVGVETTLAKDIYTYEQC-QAVMPQLIQELSGRISRSAKSRRIHKQVVKLKFDDFKQTT 299

Query: 305 IEHVHPALELDYFHELLEQVLTRQQGREIRLLGLSVMLKPE 345
           IE     + +  F++LL+Q L R+ GR IRLLG+SV L+ E
Sbjct: 300 IEQRSDEVSVKLFYDLLKQALERRAGRGIRLLGVSVGLESE 340