Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 346 a.a., Possible DNA-damage-inducible protein P DinP (DNA polymerase V) (pol IV 2) (DNA nucleotidyltransferase (DNA-directed)) from Mycobacterium tuberculosis H37Rv

 Score =  111 bits (277), Expect = 3e-29
 Identities = 90/344 (26%), Positives = 164/344 (47%), Gaps = 12/344 (3%)

Query: 6   RKIIHVDMDCFFAAVEMRDNPAYREIALAVGGH---EKQRGVISTCNYQARKFGVRSAMP 62
           R I+HVD+D F A+VE+  +P    + + VGG+    + R V++  +Y+AR +GVR+ MP
Sbjct: 7   RWILHVDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMP 66

Query: 63  TAQALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGS 122
              A + CP+   +P   + Y + S+++  + +     +E    DEAYL V+  T     
Sbjct: 67  LRTAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAVAPGT--PDD 124

Query: 123 ATLIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPL 182
              +A+ IR+ I  +  L+ S G++  K  AK+A+ L KP G+Y +T      ++    +
Sbjct: 125 PIEVAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKPAGIYQLTDANWMAIMGDRTV 184

Query: 183 EKIPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTER 242
           E + GVG    ++L + G+     +   D   L+  FG   A     + G  + EV  + 
Sbjct: 185 EALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKGGGDTEVSAQA 244

Query: 243 -ERKSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADF- 300
              +S     TF ++++   E    + +     L+  ++ +   R + +  + V+ A F 
Sbjct: 245 WVPRSRSHAVTFPRDLTCRSEMESAVTELAQRTLNEVVASS---RTVTRVAVTVRTATFY 301

Query: 301 QQTTIEHVH-PALELDYFHELLEQVLTR-QQGREIRLLGLSVML 342
            +T I  +  P+ + D        VL   +  R +RLLG+ + L
Sbjct: 302 TRTKIRKLQAPSTDPDVITAAARHVLDLFELDRPVRLLGVRLEL 345