Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  218 bits (554), Expect = 3e-61
 Identities = 132/341 (38%), Positives = 194/341 (56%), Gaps = 13/341 (3%)

Query: 6   RKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQ 65
           R I+H+DMD FFA+VE  D+P+ R   +AVGG    RGV+S  +Y+AR+FGVRSA+P + 
Sbjct: 4   RWIMHIDMDAFFASVEQMDDPSLRGKPVAVGG--SHRGVVSAASYEARRFGVRSALPMST 61

Query: 66  ALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSATL 125
           AL+LCP L VVPGRM  Y  +S +I    + ++ L+EP S+DEAYLD +      G    
Sbjct: 62  ALRLCPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVEN 121

Query: 126 IAQAIRRDIWQELN-LTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184
           +  A++  +      LT S G AP+KFLAK+ASD+NKP+GL+++ P+ V E + +LP+ +
Sbjct: 122 MGMAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPVGR 181

Query: 185 IPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERER 244
           IPGVGK +L+ L Q G+    DV R        +FG+ G  L +++ G+D REV    E 
Sbjct: 182 IPGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYSEP 241

Query: 245 KSVGVEYTFSQNIS--TFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQ 302
           KS   E TFS++ +       W + + +    + A L R       I   +KVK+ADF+ 
Sbjct: 242 KSESAENTFSEDTADRAVLRRWLLAQAE---RVGASLRRQRLAGRTIT--LKVKYADFRS 296

Query: 303 TTIEHVHP---ALELDYFHELLEQVLTRQQGREIRLLGLSV 340
            +  H  P   A     F E    +       ++RL+G+ V
Sbjct: 297 ISRSHSLPEPTASTETIFDEACRLLDALTLADKVRLIGVGV 337