Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., DNA polymerase IV from Marinobacter adhaerens HP15

 Score =  306 bits (785), Expect = 4e-88
 Identities = 173/355 (48%), Positives = 237/355 (66%), Gaps = 11/355 (3%)

Query: 6   RKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQ 65
           RKIIHVD DCF+AAVEMRD+P+ R++ LAVGG +  RGV++TCNY+AR +GVRSAMP ++
Sbjct: 4   RKIIHVDCDCFYAAVEMRDDPSLRDVPLAVGG-DGGRGVVTTCNYKARAYGVRSAMPGSE 62

Query: 66  ALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSATL 125
           A +LCP L +VP  M  Y++VSQQ+  I +  T L+EPLSLDEA+LDVS+ T ++GSATL
Sbjct: 63  ARRLCPGLVMVPTDMGRYRAVSQQVMAILRELTDLVEPLSLDEAFLDVSDVTDHKGSATL 122

Query: 126 IAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEKI 185
           +A+ +R  + QE+ +T SAGVAP KFLAK+ASD  KPDGL+V+ P+ V + V  LP+EK+
Sbjct: 123 MARHLRERVRQEVGITISAGVAPNKFLAKIASDWEKPDGLFVIRPEDVADFVRGLPVEKL 182

Query: 186 PGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERERK 245
            GVG+V   KLH  G+    D++      L+ +FG+ G  L + +HG DER VV  R  K
Sbjct: 183 FGVGQVTASKLHALGVKTCGDMQALGPDVLIERFGKQGYRLHEMAHGRDERAVVVSRIAK 242

Query: 246 SVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQTTI 305
           SV VE TFSQ++     C Q +   L  +L+ RLSR   ++ I K  IK++++DF   T+
Sbjct: 243 SVSVERTFSQDLPDMTAC-QTVMASLVADLNLRLSRKARRKPIHKLFIKIRYSDFSTHTL 301

Query: 306 EHV-----HPALELDYFHELLEQVLTRQQGREIRLLGLSVMLK-PELQMKQLSMF 354
           E V      PAL+ DY   L E V  R+  R +RLLGL V  +  +  + QL +F
Sbjct: 302 ERVREQVKEPALD-DYLPLLAELVTNRE--RPVRLLGLGVRFRNDDAPVTQLRLF 353