Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., umuC protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 60.8 bits (146), Expect = 6e-14
 Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 9/204 (4%)

Query: 11  VDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQALKLC 70
           VD + F+ + E    P +R   + V  +    G++   N QA++ G+   +P  Q   LC
Sbjct: 5   VDANSFYCSCEQVFRPDWRGKPVVVLSNND--GMVVAANRQAKEAGIPKFVPYFQIRDLC 62

Query: 71  PQLHVVP--GRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSATLIAQ 128
            +  V+       +Y  +S ++  I  R+       S+DE++L  +            AQ
Sbjct: 63  QKKGVIALSSNYELYADLSAKMMQIIGRFAPEQYVYSIDESFLSFTRCYPAITCLKTQAQ 122

Query: 129 AIRRDIWQELNLTASAGVAPIKFLAKVASDLNKP----DGLYVVTPDKVQ-EMVDSLPLE 183
           AIRR +W+E  L    G+     LAK+A+   K      G+ V+  +  +  ++  +P+ 
Sbjct: 123 AIRRAVWKEARLPVCVGIGSTLTLAKIANHAAKKISGYAGVCVIESEPQRLAILQQMPVG 182

Query: 184 KIPGVGKVALEKLHQAGLYVGADV 207
           ++ G+G+    KL   G+   A +
Sbjct: 183 EVWGIGRRLSAKLTLMGITTAAQL 206