Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  389 bits (1000), Expect = e-113
 Identities = 208/338 (61%), Positives = 253/338 (74%), Gaps = 1/338 (0%)

Query: 5   IRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTA 64
           +RKIIHVDMDC+FAAVEMRD P YR   LAVGG  ++RGVISTCNY+AR+FGVRSAM TA
Sbjct: 1   MRKIIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATA 60

Query: 65  QALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSAT 124
            A KLCP L +VPGRM VYK VS QI+ IF RYT LIEPLSLDEAYLDVS+   ++GSAT
Sbjct: 61  YAQKLCPDLILVPGRMQVYKDVSSQIRAIFSRYTELIEPLSLDEAYLDVSDCKLHKGSAT 120

Query: 125 LIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184
           LIA+AIRRDI  E  LTASAGVAP+KFLAKVASDLNKP+G YV+ PDKV E + +L L +
Sbjct: 121 LIAEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQ 180

Query: 185 IPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERER 244
           IPGVGKV  EKL   GL    DV+    ++L+ +FG+ GA L +++ GID+R +   RER
Sbjct: 181 IPGVGKVTAEKLSSLGLNTCGDVQTYPKQELITRFGKFGAVLIERAQGIDDRGLSVSRER 240

Query: 245 KSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQTT 304
           KSVGVE T +Q+I T ++C QV+   L  EL  RLSR+   R I KQ +K+KF+DF+QTT
Sbjct: 241 KSVGVETTLAQDIYTLEQCQQVM-PGLIQELSTRLSRSAKDRQIHKQVVKLKFSDFKQTT 299

Query: 305 IEHVHPALELDYFHELLEQVLTRQQGREIRLLGLSVML 342
           IEH    + +  F+ELL Q + RQ GR IRLLG++V L
Sbjct: 300 IEHRSNDVSVMMFYELLAQAIARQDGRGIRLLGVAVGL 337