Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 386 a.a., DNA polymerase IV (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  191 bits (486), Expect = 2e-53
 Identities = 120/338 (35%), Positives = 187/338 (55%), Gaps = 12/338 (3%)

Query: 9   IHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQALK 68
           +H+DMD FFA+VE  D+P+ R   + VGG   +RGV+S  +Y+AR++GVRSAMPT  A +
Sbjct: 1   MHIDMDAFFASVEQLDDPSLRGRPVIVGG-SSERGVVSAASYEARRYGVRSAMPTVTARR 59

Query: 69  LCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSATLIAQ 128
           LCP    V GR   Y  VS+ +  +   ++ ++E  S+DEAYLD +      G    +AQ
Sbjct: 60  LCPHGVFVSGRRHRYAEVSRMVMAVLHDFSPVVEQASVDEAYLDATGLERLFGPVDEMAQ 119

Query: 129 AIRRDIWQELN-LTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEKIPG 187
            ++  + +    LT S G+AP+KFLAK+ASD+NKPDG++++ P+ V   + +LP+ +IPG
Sbjct: 120 RLKGRVREATGGLTCSVGLAPVKFLAKIASDVNKPDGVFILPPEDVAAFLATLPVGRIPG 179

Query: 188 VGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERERKSV 247
           VGK  LE L   G+    DV R        +FG+ G  L+ ++ GID R +      KS 
Sbjct: 180 VGKRMLESLDLLGVRTAGDVLRHPVSFWERRFGKGGLVLYDRARGIDPRPLEPWTPPKSE 239

Query: 248 GVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGI--KVKFADFQQTTI 305
             E T + + +       V+ + L  + + R+  +  ++G+  + I  KVK+ADF+Q T 
Sbjct: 240 SAEVTLAADTAD----RAVLRRWLLAQAE-RVGGSLRRQGLAGRTITLKVKYADFRQLTR 294

Query: 306 EHVHP---ALELDYFHELLEQVLTRQQGREIRLLGLSV 340
               P   +     F E    +       ++RL+GL V
Sbjct: 295 SRTLPEPVSATQTIFEEAWALLEALDLEAKVRLVGLGV 332