Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., DNA-directed DNA polymerase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  169 bits (428), Expect = 1e-46
 Identities = 121/348 (34%), Positives = 182/348 (52%), Gaps = 20/348 (5%)

Query: 8   IIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQAL 67
           I H+D D FFA+VE RDNPA  +  + +GG   +RGV+ST  Y AR  GVRSAMP  +AL
Sbjct: 37  IAHMDCDAFFASVEKRDNPALADRPVIIGGG--RRGVVSTACYVARIKGVRSAMPMFKAL 94

Query: 68  KLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGS--ATL 125
            LCP   V+  R   Y   S+ I+ +    T  +EPLSLDEA++D+  +    G+  A +
Sbjct: 95  ALCPDAVVIKPRFEAYVEASRAIRAMMDEMTPDVEPLSLDEAFMDLGGTARLHGAPPAVM 154

Query: 126 IAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEKI 185
           +A+ ++R +  EL LT S G++  KFLAK+ASDL+KP G  V+   +  + +   P+  I
Sbjct: 155 LARLVKR-MEDELGLTGSIGLSHNKFLAKIASDLDKPRGFAVIGKAETLDFLADKPVRMI 213

Query: 186 PGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERERK 245
            GVG      L  AG+    D+ R +   L+ +FG +G  LW  + G D R V      K
Sbjct: 214 WGVGAAGQAALEAAGIRTFTDLARWEQTDLVARFGSMGLRLWHLARGEDARAVSGRSPVK 273

Query: 246 SVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQ----RGIIKQGIKVKFADFQ 301
           S+  E TFS++ +       ++E  ++   +    RA  Q    R ++   +K+K +D  
Sbjct: 274 SISNETTFSEDTAD----PDLLEGHVWRMAEKVAGRAKAQGLAGRVVV---LKLKKSDHG 326

Query: 302 QTTIEH-VHPALEL--DYFHELLEQVLTRQQGREIRLLGLSVM-LKPE 345
             T  H +  A ++    F E +        G+  RLLG+ +  L PE
Sbjct: 327 LITRRHALRDATQIADRVFREAMALFRAVPDGQSYRLLGVGLSDLVPE 374