Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., DNA polymerase IV-kappa DinB from Caulobacter crescentus NA1000

 Score =  181 bits (458), Expect = 4e-50
 Identities = 105/298 (35%), Positives = 179/298 (60%), Gaps = 12/298 (4%)

Query: 8   IIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQAL 67
           I H+D D F+A+VE RD+P+ R++ + +GG +  RGV++T  Y AR  G +SAMP  +AL
Sbjct: 38  IAHMDCDAFYASVEKRDDPSLRDLPVIIGGGK--RGVVTTACYIARMSGAKSAMPMFKAL 95

Query: 68  KLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGS--ATL 125
           KLCP   V+    + YK  S++I     R T LI+PLSLDEA++D++ +    G+  A +
Sbjct: 96  KLCPDAVVIKPNFAKYKEESRRIHEKLDRLTPLIQPLSLDEAWIDLTGTERLHGATPAQM 155

Query: 126 IAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEKI 185
           +A+ ++ +I +++ LT S G+AP KFLAK+AS+L+KP G   +   + Q  + + P+  +
Sbjct: 156 LAR-LQAEIERDIGLTVSVGLAPNKFLAKIASELDKPRGFSAIGAAEAQSFLANKPVNIL 214

Query: 186 PGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERERK 245
           PGVG   +  L + GL    D+  AD + L ++ G  G  L + +HG D R V  ++ RK
Sbjct: 215 PGVGPATVASLAEIGLRTVGDIAAADLKLLANRLGSGGMRLHRLAHGQDSRIVDPDQARK 274

Query: 246 SVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQ--GIKVKFADFQ 301
           ++  E TF+ ++   ++    +E +L+P L  ++++   Q G+  +   +K++  DF+
Sbjct: 275 TISAETTFNDDLHKRED----LEDELWP-LCEKVAKQARQEGVAGRVATLKLRTPDFK 327