Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., DNA polymerase IV from Phocaeicola vulgatus CL09T03C04

 Score =  250 bits (638), Expect = 5e-71
 Identities = 151/340 (44%), Positives = 208/340 (61%), Gaps = 10/340 (2%)

Query: 6   RKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQ 65
           RKIIH+DMD F+A+VE RDNP      LAVG H ++RGV++  +Y+AR++GV SAM + +
Sbjct: 4   RKIIHIDMDAFYASVEQRDNPELCGKPLAVG-HAEERGVVAAASYEARRYGVHSAMSSQK 62

Query: 66  ALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSATL 125
           A +LCP+L  VPGRM+VYK+VS+QI  IF  YT +IEPLSLDEA+LDV+E+ A    A  
Sbjct: 63  AKRLCPELIFVPGRMNVYKAVSRQIHDIFHTYTDIIEPLSLDEAFLDVTENKAGFSLAID 122

Query: 126 IAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEKI 185
           IA+ I++ I +EL L ASAGV+  KFLAK+ASD  KPDGL  + PD+  + +  LP+E  
Sbjct: 123 IAKDIKKRIRKELGLIASAGVSYNKFLAKIASDYRKPDGLCTIHPDQALDFIAHLPIESF 182

Query: 186 PGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERERK 245
            GVG V  +K+H  G++ G  ++      L  QFG+ G   +  + GID R V   R RK
Sbjct: 183 WGVGPVTAQKMHALGIHNGTQLQACTLEMLTRQFGKAGNLYYDFARGIDLRPVEPIRIRK 242

Query: 246 SVGVEYTFSQNISTFQECWQVIE-QKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQTT 304
           SVG E+T  ++IS       +IE   +  EL  RL R +     +   +K+KF DF Q T
Sbjct: 243 SVGCEHTLEKDISLHSSA--IIELYHVVTELLERLKRTNFSGNTLT--LKIKFHDFNQIT 298

Query: 305 --IEHVHPALELDYFHELLEQVLTR--QQGREIRLLGLSV 340
             I        +D    L +++L     +   IRL+GLSV
Sbjct: 299 RSITQDSELTSMDKILPLAKKLLKEIDYESHPIRLIGLSV 338