Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 353 a.a., DNA damage-inducible protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  245 bits (625), Expect = 1e-69
 Identities = 149/333 (44%), Positives = 203/333 (60%), Gaps = 10/333 (3%)

Query: 13  MDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQALKLCPQ 72
           MD F+A+VE RD+P  R   LAVG H ++RGV++  +Y+AR++GVRSAM + +A +LCPQ
Sbjct: 1   MDAFYASVEQRDHPELRGKPLAVG-HAEERGVVAAASYEARRYGVRSAMSSQKAKRLCPQ 59

Query: 73  LHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSATLIAQAIRR 132
           L  V GRM VYKSVS+QI  IF  YT +IEPLSLDEA+LDV+E+      A  IA+ I+ 
Sbjct: 60  LIFVSGRMDVYKSVSRQIHEIFHEYTDIIEPLSLDEAFLDVTENKKGISLAVDIAKEIKL 119

Query: 133 DIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEKIPGVGKVA 192
            I ++LNL ASAGV+  KFLAK+ASD  KPDGL  + PD+  + +  LP+E   GVG V 
Sbjct: 120 RIREQLNLVASAGVSYNKFLAKIASDYRKPDGLCTIHPDQALDFIAGLPIESFWGVGPVT 179

Query: 193 LEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERERKSVGVEYT 252
            +K+H  G++ G  +R+     L   FG++GA  ++ S GIDER V   R RKS+G E T
Sbjct: 180 AKKMHLLGIHNGLQLRKCSLEMLTAHFGKVGALYYECSRGIDERPVEAVRIRKSIGCERT 239

Query: 253 FSQNISTFQECWQVIE-QKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQTT--IEHVH 309
             ++IS       +IE   +  EL  RL R   +   +   +K+KF DF Q T  I    
Sbjct: 240 LERDISVHSSV--IIELYHVAVELIERLQRKEFKGNTLT--LKIKFHDFSQITRSITQSQ 295

Query: 310 PALELDYFHELLEQVL--TRQQGREIRLLGLSV 340
               LD    L +++L     +   IRL+GLSV
Sbjct: 296 ELYTLDRILPLAKELLKSVEYEQHPIRLIGLSV 328