Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 381 a.a., DNA-directed DNA polymerase from Burkholderia phytofirmans PsJN

 Score =  169 bits (427), Expect = 1e-46
 Identities = 112/359 (31%), Positives = 180/359 (50%), Gaps = 31/359 (8%)

Query: 6   RKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQ--------------------RGVI 45
           R+I H+DMD FFA+ E+   P  R  A+ V G                        RGV+
Sbjct: 5   RRIAHIDMDAFFASCELSQYPELRGQAMVVAGRRSDAPRVNADGTREFARLRDYAGRGVL 64

Query: 46  STCNYQARKFGVRSAMPTAQALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLS 105
           +T  Y+AR FGV S MPT QA +L P   ++P    +Y++ S+  +   +  +  IE + 
Sbjct: 65  TTATYEARAFGVHSGMPTMQAARLAPDAILLPVNFDLYRTYSRLFKDAIRSVSPTIEDVG 124

Query: 106 LDEAYLDVSESTAYQGSATLIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGL 165
           +DE Y D+S        +  IA+ ++  +++  NLT S G+AP K LAK+ SD+ KPDG+
Sbjct: 125 IDEVYADLS---LLNDESEQIARKLKSAVFEATNLTCSVGIAPNKLLAKLCSDIQKPDGI 181

Query: 166 YVVTPDKVQEMVDSLPLEKIPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGR-LGA 224
            ++  + +Q  +  +  +KI G+G  A  KL   G+    ++     + L+ QFGR  GA
Sbjct: 182 TILRLEDLQARIWPMAAKKINGIGPKANAKLTSLGITTIGEIAACSEQWLIEQFGRSYGA 241

Query: 225 SLWKKSHGIDEREVVTERERKSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHP 284
            L + SHG+D+R VVT  E  S+  E TF Q++   +   ++     +  L  +++    
Sbjct: 242 WLHRVSHGLDDRPVVTHSEPVSMSRETTFEQDLHAVRHRQEL--GTAFTRLCEQVALDLQ 299

Query: 285 QRGIIKQ--GIKVKFADFQQTT--IEHVHPALELDYFHELLEQVLTR-QQGREIRLLGL 338
           ++G + +  GIK++F DFQ  T  +    P  +         Q L R    + IRLLG+
Sbjct: 300 RKGYLARRIGIKLRFNDFQTVTRDVTLPEPVADAKALRHAATQCLKRVDLVKSIRLLGV 358