Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., DNA-repair protein (RefSeq) from Shewanella sp. ANA-3

 Score = 53.9 bits (128), Expect = 8e-12
 Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 11/205 (5%)

Query: 11  VDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQALKLC 70
           VD + F+ + E    P +R   + V  +    G I   N QAR+ G+    P     + C
Sbjct: 5   VDANSFYCSAEQVFRPDWRGKPIIVLSNND--GCIVAANRQARELGIPKFAPYFHVKEQC 62

Query: 71  PQLHVV--PGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSATLIAQ 128
            +L V+       +Y  +S ++  I  R+       S+DE++L                 
Sbjct: 63  AKLGVIVCSSNYELYADLSAKMMEIIGRFAPDQHIYSIDESFLSFKHCHTSIPCLKTHGL 122

Query: 129 AIRRDIWQELNLTASAGVAPIKFLAKVASDLNKP----DGLYVV--TPDKVQEMVDSLPL 182
            IR+ +W+E  +    G+     LAK+A+   K      G+ ++   P ++ E++  L +
Sbjct: 123 RIRQTVWKEARIPVCVGIGATLTLAKIANHAAKKLPGYHGVCLIDNEPQRI-EILKQLLV 181

Query: 183 EKIPGVGKVALEKLHQAGLYVGADV 207
             + G+G+   +KL   G++   D+
Sbjct: 182 SDVWGIGRRLSKKLVSMGIHTAYDL 206