Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella sp. ANA-3

 Score =  396 bits (1018), Expect = e-115
 Identities = 214/338 (63%), Positives = 253/338 (74%), Gaps = 1/338 (0%)

Query: 5   IRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTA 64
           +RKIIH+DMDC+FAAVEMRD P YR   LAVGG   QRGVISTCNY+ARKFGVRSAM T 
Sbjct: 1   MRKIIHIDMDCYFAAVEMRDFPEYRGKPLAVGGSRVQRGVISTCNYEARKFGVRSAMATG 60

Query: 65  QALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSAT 124
            ALKLCP L +VPGRM VYK VSQQI+ IF RYT LIEPLSLDEAYLDVS+   ++GSAT
Sbjct: 61  YALKLCPDLILVPGRMQVYKEVSQQIRAIFCRYTELIEPLSLDEAYLDVSDCKLFKGSAT 120

Query: 125 LIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184
           LIA+AIRRDI  E  LTASAGVAPIKFLAKVASDLNKP+G  V+ PD+V E V SL L K
Sbjct: 121 LIAEAIRRDILAETGLTASAGVAPIKFLAKVASDLNKPNGQCVIPPDEVAEFVKSLSLRK 180

Query: 185 IPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERER 244
           IPGVGKV  EKL   GL   ADV+    ++L+ +FG+ G  L +++HGIDER +   RER
Sbjct: 181 IPGVGKVTAEKLSSLGLNTCADVQAYPKQELIARFGKFGTVLVERAHGIDERGISVSRER 240

Query: 245 KSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQTT 304
           KSVGVE T +Q+I T ++C QV+   L  EL +RL R+   R I KQ +K+KF DF+QTT
Sbjct: 241 KSVGVETTLAQDIYTLEQCQQVM-PGLIQELSSRLGRSAKGRQIHKQVVKLKFNDFKQTT 299

Query: 305 IEHVHPALELDYFHELLEQVLTRQQGREIRLLGLSVML 342
           IEH    + +  F+ELL Q + RQ+GR IRLLG+SV L
Sbjct: 300 IEHRSDEVSVVMFYELLSQAMARQEGRGIRLLGVSVGL 337