Pairwise Alignments

Query, 451 a.a., sodium-dependent transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., sodium:neurotransmitter symporter (RefSeq) from Shewanella loihica PV-4

 Score =  179 bits (454), Expect = 2e-49
 Identities = 131/461 (28%), Positives = 220/461 (47%), Gaps = 37/461 (8%)

Query: 7   RETFSSRLGFILAAAGAAVGLGNIWGFPTQAASNGGGAFLLVYLILIFVVAFPMLVVEMA 66
           RE ++SR+GFILAA G+A+GLGNIW FP  A  NGGGAF + YL  +     P +++E +
Sbjct: 3   REQWNSRVGFILAAVGSAIGLGNIWRFPYMAYDNGGGAFFIPYLFAMITAGIPFMIMEFS 62

Query: 67  IGRYGQANPVDSMRSLTSQPAAKKVGGFVGWVGLSVPSAVLAFYSIVGGWIICFLLGAMT 126
           +G   +         L      +    ++GW  + + + +  +Y  + GW + +L     
Sbjct: 63  LGHKIKKTSPRIFAQLGHTLGFRLE--WLGWFQVFIAAVIAVYYVAIIGWTLSYL----- 115

Query: 127 DLFGFTAASAW------------LKGFSVERNLFGTL---------IFYVLTILIVQGGV 165
              GF+ + AW            LK  +   +  G           I +++T + V  GV
Sbjct: 116 ---GFSFSQAWGDNPNDFFFNHYLKLGNNSPSHLGEFQIGIAIAMSIAWLMTFMAVFTGV 172

Query: 166 KQGIERWSTRLMPALFVLFAVLFIYIMTQQGAWEGLKHYLIPDFEKVWDRKLILAAMGQG 225
           K GIER +  +MP LF++  VL   IM   GA  GL +   PDF ++ D ++  AA GQ 
Sbjct: 173 KGGIERANKIMMPMLFIMVLVLIGRIMFLPGALSGLNYLFEPDFSRLLDAQVWSAAYGQI 232

Query: 226 FFSLTIGGCSMLIYGSYLSKKENLPKMAMSVTLVDTAVAFIAGLVVLPAMFVAMNKGVQI 285
           FF+L++G   ML Y SYL  K ++   A    L++   + +AG+++   +     + ++ 
Sbjct: 233 FFTLSVGFAIMLAYSSYLPTKADINNNAFMTVLINCGFSILAGILIFGVLGYMAEEQMKP 292

Query: 286 YAQDGSLLSSDTLVFTVLPLMFDSLGLLGQIFAMVFFLLLTIAALTSSISMLECPVALVG 345
             +  S  S   L F  +P    +L     I   +FF+ L IA L+S IS++E   + V 
Sbjct: 293 LTEVVS--SGIGLAFVTIPTAI-NLMPAPYILGPLFFIALVIAGLSSHISIIEAVTSAVI 349

Query: 346 ERFNTRRTPTSWVLGGLIALFSVVIVYNFGALFGLVATLATQYLQPTAALMFCLFGGWVW 405
           ++F+ RR P + ++  L  L S+    N G    L+  L   ++   A L+ CL    + 
Sbjct: 350 DKFHVRRKPAAVLVCSLGYLVSMAFATNGGL---LLLDLVDYFINNIALLLSCLLELVII 406

Query: 406 QRDAKMKELQAGFPELQQSLFGKIWPWYVKFVCPVLVATVI 446
               K+  +     E  +   G  +   ++F+ P ++AT++
Sbjct: 407 TWLLKVTVIHQHANENSEFRVGGWFVVCLRFISPAILATIL 447