Pairwise Alignments

Query, 451 a.a., sodium-dependent transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., sodium-dependent transporter from Methanococcus maripaludis JJ

 Score =  196 bits (497), Expect = 2e-54
 Identities = 132/458 (28%), Positives = 234/458 (51%), Gaps = 34/458 (7%)

Query: 6   SRETFSSRLGFILAAAGAAVGLGNIWGFPTQAASNGGGAFLLVYLILIFVVAFPMLVVEM 65
           +RE ++S++GFILAA G+AVGLGNIW FP  A  NGGGAFL+ Y + +  V   ++V+E+
Sbjct: 2   AREQWASKMGFILAAVGSAVGLGNIWRFPYMAYENGGGAFLIPYFVALLFVGIMVMVLEL 61

Query: 66  AIGRYGQANPVDSMRSLTSQPAAKKVGGFVGWVGLSVPSAVLAFYSIVGGWIIC-----F 120
           A+G   + +   ++R L       K   ++GW+ ++    +  +Y+ +  W +      F
Sbjct: 62  ALGHSTKGSAPLALRRLG------KNFEWIGWLAIATAFIITTYYTAIIAWALVYLVKLF 115

Query: 121 LLGAMTDLFGF--------TAASAWLKGFSVERNLFGTLIFYVLTILIVQGGVKQGIERW 172
           ++G  TD  GF        ++    L GF++   L G  + + +  ++V  GV++G+E+ 
Sbjct: 116 MVGFPTDFGGFFFSDILALSSGHGDLGGFNLPI-LVGLALIWGVNYIVVNSGVRKGLEKA 174

Query: 173 STRLMPALFVLFAVLFIYIMTQQGAWEGLKHYLIPDFEKVWDRKLILAAMGQGFFSLTIG 232
           +  LMP LF L   L +  +T  G   G+++YL P+F  +   K+ + A  Q FF+L++G
Sbjct: 175 NEILMPVLFFLILALVVRSITLPGGLMGIEYYLTPNFAVLLTPKVWIDAFSQIFFTLSLG 234

Query: 233 GCSMLIYGSYLSKKENLPKMAMSVTLVDTAVAFIAGLVVLPAM-FVAMNKGVQIYAQDGS 291
              M+ Y SYL KK +L   A +++L++   +F+AG  V   + ++AM +GV I      
Sbjct: 235 FGIMVAYSSYLPKKSDLTASAFTISLMNCGFSFLAGFAVFGTLGYMAMTQGVPI---SEV 291

Query: 292 LLSSDTLVFTVLPLMFDSLGLL--GQIFAMVFFLLLTIAALTSSISMLECPVALVGERFN 349
           +  S  L F   P    +L L+  G I A +FF+ L +A ++SS+S++E   + V ++FN
Sbjct: 292 VTQSIGLAFVAFP---QALSLMPGGIILAAIFFIALFVAGISSSVSLVESTASAVIDKFN 348

Query: 350 TRRTPTSWVLGGLIALFSVVIVYNFGALF-GLVATLATQYLQPTAALMFCLFGGWVWQRD 408
             R   +  +       S++   N G  +   V      +  P  A++  +   W++   
Sbjct: 349 LPRHKAASAVIATSFFASLIYATNAGLYWLDSVDHYINWFTIPLVAVLEIIVSIWIF--- 405

Query: 409 AKMKELQAGFPELQQSLFGKIWPWYVKFVCPVLVATVI 446
            K  +L+     L +   G  W ++     P+ +  +I
Sbjct: 406 -KGSKLEKYIDNLSEYNLGSFWKFFAGIFSPLFLIYMI 442