Pairwise Alignments

Query, 301 a.a., 30S ribosomal protein S6--L-glutamate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., ribosomal protein S6 modification protein-related protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 52.8 bits (125), Expect = 2e-11
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 14/225 (6%)

Query: 55  LAGFDAVIPRIGASVTFYGTAVLRQFEMMGVYPANESVAITRSRDKLRSMQLLSRRGIGM 114
           L  FDA+  R   S+  Y   + +     G+   ++ ++I R  +K+   +L  +  I  
Sbjct: 238 LLEFDALFIRTTTSLNHYTFHLSQLAAQNGMVVIDDPLSIIRCTNKVYLKELFEKERIPA 297

Query: 115 PITG--FASKPDDVKDLLDMVGGAPVVIKLLEGTQGIGVVLAETRTAAESVIEAFMGLKA 172
           P +   F S  +  + + + VG AP ++K+ +G+  IG+         ++ +E      A
Sbjct: 298 PKSTLIFQSNENSFEQISEQVG-APFILKIPDGSYSIGMKKVSNEEELKTSLELLFEKSA 356

Query: 173 NIMVQEYIKEAGGADIRCFVIGDKVIAAMKRQGADGEFRSNLH------RGGTASLVKIT 226
            ++ Q +       D R  ++    + A K   A G ++   H      R G    + I 
Sbjct: 357 ILLAQAFTPTE--FDWRVGLLNGVPLYACKYYMAKGHWQIYCHYDSGRSRCGLVDTIPIY 414

Query: 227 PQER---KTAIEAAKIMGLNVAGVDLLRSARGPLVMEVNSSPGLE 268
              R    TAI+AA ++G  + GVDL        V+E+N +P ++
Sbjct: 415 QVPRVVLDTAIKAANLIGKGLYGVDLKMVDDKAYVIEINDNPSID 459