Pairwise Alignments

Query, 367 a.a., riboflavin biosynthesis protein RibD from Vibrio cholerae E7946 ATCC 55056

Subject, 381 a.a., riboflavin biosynthesis protein RibD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  361 bits (927), Expect = e-104
 Identities = 192/364 (52%), Positives = 258/364 (70%), Gaps = 16/364 (4%)

Query: 8   DHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQAGEL 67
           D+QMMSRAI+LA +G +TT PNP+VGCVI    QIVGEG+H +AGEPHAEVHA+R AGEL
Sbjct: 7   DNQMMSRAIQLARKGFYTTRPNPSVGCVIVNDNQIVGEGYHQKAGEPHAEVHALRMAGEL 66

Query: 68  TRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEV 127
            RGATAYVTLEPCSHYGRTPPCA  LI  GV +V+ A++DPNPQV G+G+QMLRDAGI+V
Sbjct: 67  ARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAGIQV 126

Query: 128 EVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARKDVQR 187
           +VGL   +A  LN GF+KRME+G+P+V +K+AASLDG+TAL+NG S+WIT P AR+DVQR
Sbjct: 127 DVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEARRDVQR 186

Query: 188 FRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQLHPEL 247
            R ++ A+++  +TVLAD+ SL VR+ +L  S++AQ +E+ + QPLRV+LD + ++    
Sbjct: 187 LRLRSCALITGIETVLADDPSLNVRYSEL-GSLRAQLSESQVLQPLRVVLDSRARMPITA 245

Query: 248 ALYQTPSPVLRVASENAE-------------LCISAENGKLDLRELLALLAQQHNVNQLW 294
           AL+   SP+L V++ +               L + A  G++ L  LL+ L +  + NQ+ 
Sbjct: 246 ALFAIESPILLVSTVSYSSDFMVQLPAHVTCLQLPAIEGRISLSALLSYLGK--SCNQVL 303

Query: 295 VEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVG 354
           +EAG+ LA + I   L DE++LY A K++G  GR L        MA+   LK+ D R VG
Sbjct: 304 IEAGATLAGAFIGSGLADELVLYQAMKILGGQGRNLLELPDYQMMADIPTLKLVDERKVG 363

Query: 355 ADLR 358
           AD R
Sbjct: 364 ADTR 367