Pairwise Alignments

Query, 156 a.a., N utilization substance protein B from Vibrio cholerae E7946 ATCC 55056

Subject, 134 a.a., transcription antitermination protein NusB (RefSeq) from Shewanella loihica PV-4

 Score =  145 bits (367), Expect = 2e-40
 Identities = 74/143 (51%), Positives = 95/143 (66%), Gaps = 14/143 (9%)

Query: 5   VKPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVS 64
           +KP+ RR AR+ A+QAIYSWQ++  NVA +E +FLT  K D                DVS
Sbjct: 1   MKPSERRKARRLAVQAIYSWQLSGNNVADVEHEFLTEQKIDG--------------VDVS 46

Query: 65  YFRDLLAGVVLNHNELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINE 124
           YFR+LL+G      +LD  + P + RP  ++  +E A+LR+A YE+T R+DVPYKV INE
Sbjct: 47  YFRELLSGTTTKSAQLDELIMPHLERPFDEVSPIEKAVLRIATYELTFRKDVPYKVAINE 106

Query: 125 AIELAKVFAAEDSHKFVNGVLDK 147
           AIELAK F AED HKFVNG+LDK
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDK 129