Pairwise Alignments

Query, 156 a.a., N utilization substance protein B from Vibrio cholerae E7946 ATCC 55056

Subject, 159 a.a., NusB antitermination factor (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 50.1 bits (118), Expect = 2e-11
 Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 14/158 (8%)

Query: 4   SVKPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHR--AAEPALAAPET 61
           + K  A+  AR +A+QA++  +   ++  ++  +F        E+HR  A        E 
Sbjct: 9   AAKRQAKSAARLYAVQALFQMEAAGQSADSVIREF--------EDHRFGAIYEEGEMAEG 60

Query: 62  DVSYFRDLLAGVVLNHNELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYK 119
            V+ FR  +   V    ++D      ++   P+  +D    AL R A  E+ R  D P K
Sbjct: 61  HVTLFRTTVGEAVNWQAKIDQLTDRALATAWPIDRIDPTLRALFRAAGAELVRA-DTPPK 119

Query: 120 VVINEAIELAKVFAAEDSH-KFVNGVLDKAAPHVRKKA 156
           VVINE ++LA+ F  +    KFVN VLD  A   +  A
Sbjct: 120 VVINEYVDLARAFFPDGKEPKFVNAVLDHMAREAKPDA 157