Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 791 a.a., outer membrane protein assembly factor BamA from Pseudomonas fluorescens FW300-N2C3

 Score =  584 bits (1506), Expect = e-171
 Identities = 323/810 (39%), Positives = 470/810 (58%), Gaps = 28/810 (3%)

Query: 3   MKQILLATLLATSVSAN-GAEKFVVQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVAN 61
           MK++LL  +L   + A   AE F + DI+++GLQRV+ G+    +P+ VG+  D + +  
Sbjct: 1   MKRLLLTAVLTVLMIAEVHAESFTISDIRVNGLQRVSAGSVFGALPLNVGEQADDRRLVE 60

Query: 62  IIKALYSSGNFEDVKVLRDGNTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIRV 121
             +AL+ +G F+D+++ RDGN L++ V ERP++AS+   GNKAI  E L + L+ S +  
Sbjct: 61  STRALFKTGFFQDIQLGRDGNVLVITVVERPSVASIEIEGNKAISTEDLMKGLKQSGLAE 120

Query: 122 GEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRADLKFVFTEGVSAKIQQIN 181
           GE   R TL  +   L+  Y + G+Y+ATV   V P PRNR  LK    EG  A IQ IN
Sbjct: 121 GEIFQRATLEGVRNELQRQYVAQGRYSATVDTEVVPQPRNRVGLKVNINEGTVAAIQHIN 180

Query: 182 FIGNQVFSDEELLSRFNLNVDVAWWNFLA-DDKYKKQVLAGDIEALRTYYLDRGYLKFQV 240
            +GN VF DE+L+  F L     W +F   DDKY ++ L+GD+E LR+YYLDRGY+   +
Sbjct: 181 VVGNTVFPDEDLIDLFELKT-TNWLSFFKNDDKYAREKLSGDLERLRSYYLDRGYINMDI 239

Query: 241 DSTQVAISPDKKGVYITLNLNEGEPYTVSKVQFRGELMGKEAEFTSLIPFEIGETYNGSA 300
            STQV+I+PDKK VYIT+N+NEGE YTV  V+  G+L   E +  SL+  + G+ ++   
Sbjct: 240 ASTQVSITPDKKHVYITVNVNEGEKYTVRDVKLSGDLKVPEDQVKSLLLVQKGQVFSRKL 299

Query: 301 VTRLEESVKKVLGESGYAYPQVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNST 360
           +T   E + + LG  GY +  V  +P+  DE   V +   V+ GKR YV  I F GN  +
Sbjct: 300 MTTTSELITRRLGNEGYTFANVNGVPQPHDEDHTVDITFAVDPGKRAYVNRINFRGNTKS 359

Query: 361 RDEVLRREMRQMEGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVKE 420
            DEVLRREMRQMEG W ++  I+  KTRL RLGFF+ V V+T  VPG +DQVD+ YSV+E
Sbjct: 360 EDEVLRREMRQMEGGWASTYLIDQSKTRLERLGFFKEVNVETPAVPGVDDQVDVNYSVEE 419

Query: 421 ANSGNVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNL 480
             SG++   VG+   +G+     + Q+NFLG+GN+V +    ++YQ      + DPYW  
Sbjct: 420 QASGSITASVGFAQSAGLILGGSITQNNFLGTGNKVSIGLTRSEYQTRYNFGFVDPYWTA 479

Query: 481 DGVSLGGKVFY--NQFEASEAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKIGN 538
           DGVSLG   FY    ++  ++ I  Y  +SYG     G+P  E +R  FG+    +KI N
Sbjct: 480 DGVSLGYNAFYRTTDYDELDSDISSYAVDSYGVGANIGYPISETSRLTFGLTAQQDKI-N 538

Query: 539 LTPYLQVENFLAAQASNIDSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKMTV 598
              Y   E F      N +    L   +F  +  W+ + LN     T G+ Q   ++ T 
Sbjct: 539 TGRYTVDEIF---DFVNKEGDSYL---NFKASAGWSESTLNKGVLATRGHSQSLVFETTT 592

Query: 599 PGSDAQYFKLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYAGG 658
           PGSD  +FKL Y  + + PL+    +T+ L   LGYG+GYG TDG     PFYEN+YAGG
Sbjct: 593 PGSDLSFFKLDYRGQLFQPLS--DNYTMRLHTELGYGDGYGSTDG----LPFYENYYAGG 646

Query: 659 FTSLRGFGSNSAGPKAVYRDYSGSNNGSDTATDDS---VGGNAIALASVELIVPTPFASE 715
           F S+RGF  ++ GP++      G+N G+    D      GGN +    +E++ P PF  +
Sbjct: 647 FNSVRGFKDSTLGPRST--PSQGNNPGTIRDPDQDPLPFGGNVLIQGGLEVLFPMPFVKD 704

Query: 716 EARNQIRTSIFYDMASVWDTEFDYRGKADYGNQYYYDYSD--PTNYRSSYGVALQWVSPM 773
           +    +RTS+F+D+ +V+D+       A+ G +     +D   +N  SS GV + WV+ +
Sbjct: 705 Q--RSLRTSVFWDVGNVFDSSCSDTTNAN-GTKSDTKCNDISLSNLASSVGVGVTWVTAL 761

Query: 774 GPLVFSLAKPIKKYEGDDEEFFTFTIGRTF 803
           GPL F+LA PIKK +  + + F F++G+TF
Sbjct: 762 GPLSFALAMPIKKPDDAETQVFQFSLGQTF 791