Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., Outer membrane protein from Pseudomonas stutzeri RCH2

 Score = 60.1 bits (144), Expect = 4e-13
 Identities = 116/545 (21%), Positives = 192/545 (35%), Gaps = 85/545 (15%)

Query: 256 ITLNLNEGEPYTVSKVQFRGELMGKEAEFTSLI----PFEIGETYNGSAVTRLEESVKKV 311
           + L +  GEP  +  +  R  L G  AEF+           G+  N      +++     
Sbjct: 123 LVLRVQTGEPVRLRNITVR--LDGPAAEFSGFRVAQRTLRQGDVLNHGRYEDVKQQFLNQ 180

Query: 312 LGESGY---AYPQVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNSTRDEVLRRE 368
               GY    + + R   +  +    V LV   ++G R  + D+RF G+    D++LRR 
Sbjct: 181 ASRYGYFDGRFTRQRLAVDPRENTADVELVF--DSGPRYRLGDVRFEGDAPFDDDLLRRM 238

Query: 369 MRQMEGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVKEANSGNVNF 428
           +     +  +S+ I      L   G+FE V V       SE ++ +  ++          
Sbjct: 239 VPFDADTPYDSELIAELSQALQSSGYFEGVRVDANPTSASEQRIPVAVALTTRKPRTFGL 298

Query: 429 GVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNLDGVSLGGK 488
           G+GY T+ G   ++   +      G+  G    ++  ++N+ L Y  P   LD       
Sbjct: 299 GLGYSTDVGPRVRLNWTRHWVNPQGHSYGAETELSAPRQNVGLWYDIP---LDPPLTDKL 355

Query: 489 VFYNQFEASEAGIVDYTNESYGTSLTW--GFPFDELNRFEFGIGYTHNKIGNLTPYLQVE 546
            F   ++  E    D  +        W    P   L        +   K+G+        
Sbjct: 356 RFVGGYQYEEIAGTDTLSRLLKVGPEWHSRLPSGWLRVVSLKWQHEEYKLGD-------- 407

Query: 547 NFLAAQASNIDSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKMTVPG--SDAQ 604
                     DSG + L     I  S+ R+  +N   P+ G   +        G  SDA 
Sbjct: 408 ----------DSGISTLLMP-GIAYSYLRS--DNRIDPSNGYRLQFEVAAAKSGVLSDAD 454

Query: 605 YFKLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYAGGFTSLRG 664
                  +R    L ++H F     GR+  G  +  TD   N+ P    ++AGG  S+RG
Sbjct: 455 LVHANVLLRGLTTLGQRHRFL----GRVQLGGNW--TDEYVNVPPSL-RYFAGGDQSVRG 507

Query: 665 FGSNSAGPKAVYRDYSGSNNGSDTATDDSVGGNAIALASVELIVPTPFASEEARNQIRTS 724
           +   S  P                +  D +GG      S E                   
Sbjct: 508 YDYQSLSP--------------TNSDGDKIGGRYQFAVSAE------------------- 534

Query: 725 IFYDMASVWDTEFDYRGKADYGNQYYYDYSDPTNYRSSYGVALQWVSPMGPLVFSLAKPI 784
             Y +A  W          D GN   ++  +    +S+ GV ++WVSP+GP+   LA P+
Sbjct: 535 YQYSIAEKWRV----ATFVDQGNA--FNSLEIPTLKSAVGVGVRWVSPVGPIRVDLAHPL 588

Query: 785 KKYEG 789
               G
Sbjct: 589 DSEGG 593



 Score = 33.1 bits (74), Expect = 5e-05
 Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 221 GDIEALRTYYLDR----GYLKFQVDSTQVAISPDKKGVYITLNLNEGEPYTVSKVQFRGE 276
           G  E ++  +L++    GY   +    ++A+ P +    + L  + G  Y +  V+F G+
Sbjct: 168 GRYEDVKQQFLNQASRYGYFDGRFTRQRLAVDPRENTADVELVFDSGPRYRLGDVRFEGD 227

Query: 277 LMGKEAEFTSLIPFEIGETYNGSAVTRLEESVKKVLGESGY 317
               +     ++PF+    Y+   +  L ++    L  SGY
Sbjct: 228 APFDDDLLRRMVPFDADTPYDSELIAELSQA----LQSSGY 264



 Score = 29.6 bits (65), Expect = 5e-04
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 14/99 (14%)

Query: 161 NRADLKFVFTEGVSAKIQQINFIGNQVFSDEELLSRFNLNVDVAWWNFLADDKYKKQVLA 220
           N AD++ VF  G   ++  + F G+  F D++LL R           F AD  Y  +++A
Sbjct: 203 NTADVELVFDSGPRYRLGDVRFEGDAPF-DDDLLRRM--------VPFDADTPYDSELIA 253

Query: 221 GDIEALRTYYLDRGYLK-FQVDSTQVAISPDKKGVYITL 258
              +AL++     GY +  +VD+   + S  +  V + L
Sbjct: 254 ELSQALQS----SGYFEGVRVDANPTSASEQRIPVAVAL 288



 Score = 26.6 bits (57), Expect = 0.004
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 46  MPVRVGDSVDSQDVANIIKALYSSGNFEDVKVLRDGNTLMVQVKERPTIASVS 98
           +P       DS+ +A + +AL SSG FE V+V  D N      +  P   +++
Sbjct: 239 VPFDADTPYDSELIAELSQALQSSGYFEGVRV--DANPTSASEQRIPVAVALT 289