Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 790 a.a., surface antigen (D15):Surface antigen variable number from Pseudomonas syringae pv. syringae B728a

 Score =  550 bits (1417), Expect = e-160
 Identities = 304/813 (37%), Positives = 459/813 (56%), Gaps = 33/813 (4%)

Query: 1   MAMKQILLATLLATSVSANGAEKFVVQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVA 60
           M   ++LL+  L  SV    A+ F + DI+++GLQRV+ G+    +P+ VGD  D Q +A
Sbjct: 1   MISSRLLLSFCLLLSVPLAHADTFSISDIRVNGLQRVSAGSVFAALPLNVGDQADEQRLA 60

Query: 61  NIIKALYSSGNFEDVKVLRDGNTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIR 120
           +  ++L+ +G F+D+ V RDGN L++ V ERP+IAS+   GNK I  + L + L+ S + 
Sbjct: 61  DASRSLFKTGFFQDINVARDGNVLVINVVERPSIASIEIVGNKVISTDDLMKGLKQSGLS 120

Query: 121 VGEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRADLKFVFTEGVSAKIQQI 180
            GE   R TL  +   L+  Y S G+Y+A+V     P PRNR  LK    EG  A IQ I
Sbjct: 121 EGEIFQRATLEGVRNELQRQYVSQGRYSASVDTQALPAPRNRIALKITIDEGTVASIQHI 180

Query: 181 NFIGNQVFSDEELLSRFNLNVDVAWWNFLA-DDKYKKQVLAGDIEALRTYYLDRGYLKFQ 239
           N +GN VFSDE+L  +F L     W +F   DDKY ++ L+GD+E LR++YLDRGY+   
Sbjct: 181 NVVGNTVFSDEQLADQFQLKTS-NWLSFFKNDDKYAREKLSGDLERLRSWYLDRGYINMD 239

Query: 240 VDSTQVAISPDKKGVYITLNLNEGEPYTVSKVQFRGELMGKEAEFTSLIPFEIGETYNGS 299
           ++STQV+++PDKKGV+IT+N+ EG+ YTV  V+  G+L   + +   LI  + G+ ++  
Sbjct: 240 INSTQVSLTPDKKGVFITVNITEGDRYTVGSVKLGGDLKVPKDQLEQLILVKPGQVFSRK 299

Query: 300 AVTRLEESVKKVLGESGYAYPQVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNS 359
            +T     + + LG  GY +  V  +P+ +D    V +   V+ GKR Y   I F GN  
Sbjct: 300 VMTDSSNLITRRLGNDGYTFANVNGVPKANDADHTVDISFVVDPGKRAYANRINFRGNTK 359

Query: 360 TRDEVLRREMRQMEGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVK 419
           T DEVLRREMRQMEG W ++  I+  K RL RLGFF+ V V+T  VPG++DQVD+ Y+V+
Sbjct: 360 TADEVLRREMRQMEGGWASTYLIDQSKVRLERLGFFKEVNVETPAVPGTDDQVDINYAVE 419

Query: 420 EANSGNVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWN 479
           E  SGN+   VG+   +G+     + Q+N LG+GN   +    ++YQ      + +PY+ 
Sbjct: 420 EQASGNITASVGFSQSAGLILGGSISQNNILGTGNFASLGMTRSEYQTKYNFAFTNPYFT 479

Query: 480 LDGVSLGGKVFYNQFEAS-----EAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHN 534
            DGVSLG  VFYN  + S     +  +  Y+  S G  +  G+P  E +R  +G+    +
Sbjct: 480 PDGVSLGYNVFYNATDYSKYYDDDDEVSYYSLNSVGAGVNLGYPISETSRLTYGLSIQRD 539

Query: 535 KIGNLTPYLQVENFLAAQASN-IDSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAF 593
                   L   ++ A +  + I+  G+  T +   ++ W+ + LN     T G+ Q   
Sbjct: 540 T-------LDPGSYSADEIYDFIEREGDAFT-NLKASVGWSESTLNKGVLATRGHSQSLT 591

Query: 594 YKMTVPGSDAQYFKLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYEN 653
              TVPGSD Q++KL Y+ + + PL+     +L L  +LGYGNGYG TDG     PFYEN
Sbjct: 592 LTSTVPGSDLQFYKLDYNGQTFLPLS--DTTSLRLHTKLGYGNGYGDTDG----LPFYEN 645

Query: 654 FYAGGFTSLRGFGSNSAGPKAVYRDYSGSNNGSDTATD---DSVGGNAIALASVELIVPT 710
           + AGG  ++RGF   + GP+      + ++ G    +D   +++GGN +    +E + P 
Sbjct: 646 YTAGGQATVRGFKDGTLGPRNTPATGTYASQGQIYYSDRDTEALGGNILITGGMEYLFPM 705

Query: 711 PFASEEARNQIRTSIFYDMASVWDTEFDYRGKADYGNQYYYDYSDPTNYRSSYGVALQWV 770
           PF  ++    +RTS+F+D  +V+  +       + GN       +     SS GV + W 
Sbjct: 706 PFVKDQ--KSLRTSLFWDFGTVYADKCYLTTTQNCGN------INIDQMASSVGVGVTWY 757

Query: 771 SPMGPLVFSLAKPIKKYEGDDEEFFTFTIGRTF 803
           SP+GPL F LA PIKK E  + + F F++G+TF
Sbjct: 758 SPLGPLSFDLAVPIKKPEDAETQVFQFSLGQTF 790