Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 721 a.a., outer envelope membrane protein from Synechococcus elongatus PCC 7942

 Score = 68.9 bits (167), Expect = 9e-16
 Identities = 86/343 (25%), Positives = 138/343 (40%), Gaps = 52/343 (15%)

Query: 360 TRDEVLRREMRQMEGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVK 419
           TR  ++ RE    EG   N    E G  R+  LG F  V +     P    +V +V +V+
Sbjct: 297 TRPFIVTREYSFKEGDVFNRPQAEAGLRRIFGLGLFSDVRLNLEPDPRDPTKVVVVTNVQ 356

Query: 420 EANSGNVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWN 479
           E+++GN + GVG+   SG+   +GLQ+ NF G+  ++G    +   Q    + + DP+  
Sbjct: 357 ESSTGNFSAGVGFSDASGLFGTIGLQEQNFGGNNQKLGFQLSVGQRQALFDISFSDPW-- 414

Query: 480 LDGVSLGGKVFYNQFEASEAGIVDYTN---------------ESYGTSLTWGFP-FDELN 523
           + G         N F ++E  +  +TN               +  GT + +  P  D   
Sbjct: 415 IAGDPFRSSYSVNVFRSAELAL-QFTNGPIDVNLPNGNSIITQRTGTQILFTRPQADPYT 473

Query: 524 RFEFGI--GYTHNKI------GNLTPYLQVENFLAAQASNIDSGGNLL----TDDFDINL 571
           R E+ +  G + N +      GN     +  N L A   + D+   L+     D  D   
Sbjct: 474 RPEWTLFGGVSFNVVDITDINGNAFAQDEFGNPLTASGGSQDTLFGLIFGAVRDTRDNVA 533

Query: 572 SWTRNNL----NNSYFPTAG-----NHQRAFYKMTVPGSDAQYFKLQYDVRQYFPLTKKH 622
           + TR +L     + + P        N  RA Y   VP    +  + Q   R+  P  ++ 
Sbjct: 534 TPTRGSLFRFNVDQFLPITANGVFYNRIRAGYSFYVP---IRLLRFQEGCRKDNPTAEEC 590

Query: 623 EFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYAGGFTSLRGF 665
             TL    + G   G        NL P YE F  GG  ++RG+
Sbjct: 591 PQTLAFNIQAGTALG--------NL-PPYEAFCIGGVNTVRGY 624



 Score = 26.9 bits (58), Expect = 0.004
 Identities = 42/146 (28%), Positives = 57/146 (39%), Gaps = 25/146 (17%)

Query: 134 EKGLEDFYYSVGKYNATVKAVVTPLPRNRADLKFVFTEGVSAKIQ----------QINFI 183
           E  L D  Y   +  A   +  T L     D+  +F  G+ + +Q          QI F+
Sbjct: 133 EAQLLDAIYGAIRTQAGATSTRTQLQN---DVNAIFGTGLFSNVQVLPEDTPLGVQITFV 189

Query: 184 --GNQVFSDEELLSRFNLNVDVAWWNFLADDKYKK----QVLAGDIEALRTYYLDRGYLK 237
              N V S  EL     L   V    F   D Y K    Q L   I  L T+Y + GY+ 
Sbjct: 190 VEPNPVLSKIELDGARVLPDSVIQETF--KDDYGKILNLQTLQARIRTLNTWYRENGYVL 247

Query: 238 FQVDSTQVAISPDKKGVYITLNLNEG 263
            QV      ISP+ +   +TL + EG
Sbjct: 248 AQVVDAS-RISPNGE---VTLRVAEG 269