Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 618 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score = 51.2 bits (121), Expect = 2e-10
 Identities = 105/560 (18%), Positives = 191/560 (34%), Gaps = 67/560 (11%)

Query: 249 PDKKGVYITLNLNEGEPYTVSKVQFRGELMGKEAEFTSLIPFEIGETYNGSAVTRLEESV 308
           PD + V + + +  G  +T+  V+  G+    +     L   + G   + + + +  E +
Sbjct: 121 PDGQPVPVVVRVAPGPAFTLGTVRLEGDAARLDPAAYDL---KRGARADSTLIIKAGEQI 177

Query: 309 KKVLGESGYAYPQV--RTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNSTRDEVLR 366
              L E      ++  R++   D     V + +  + G    V ++   G  +   + ++
Sbjct: 178 VNDLKEQSRPLAKLAERSVVA-DHATSTVDVTIRADGGPVAPVGNLTVSGARTVDPDFVK 236

Query: 367 REMRQMEGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVKEANSGNV 426
              R   G   + ++I     RL +L  F +V +        +  + +   V E      
Sbjct: 237 DYSRLNHGRPYSPENIRKAAERLRQLNVFSSVTINEADGLAPDGTIPMNIQVSEGKHRYF 296

Query: 427 NFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNLDGVSLG 486
            FG    T  G+  Q      N  G    + +   ++   +   +   D    +     G
Sbjct: 297 GFGGQVSTTDGLGLQGYWGHRNLFGRAESLRIEGSVDRLGETTDVAGLDYSAGILFAKPG 356

Query: 487 GKVFYNQFEAS-EAGIVDYTNESYGT-SLTWGFPFDELNRFEFGIGYTHNKIGNLTPYLQ 544
                + F AS +A IVD    S  T +   G  F+      F +G              
Sbjct: 357 AFGPASTFTASVKAAIVDPDAYSAKTVTAAAGAAFELSPEDTFSVGAE------------ 404

Query: 545 VENFLAAQASNIDSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKMTVPGSDAQ 604
                   A   D+ G+       +   + R+  ++   PT G       K +       
Sbjct: 405 -----VGWADVDDAFGSNSYITAALPFEYVRDARDDKLNPTEGYRALINAKPSYEIEGKT 459

Query: 605 YFK-LQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYAGGFTSLR 663
           +F   +     Y+    +  F  +L G+LG G   G  +  D   P    F+ GG  S+R
Sbjct: 460 FFSSFEASASGYYAFGTEKRF--VLAGKLGAGVLVGGDELSD--IPATRRFFLGGGGSVR 515

Query: 664 GFGSNSAGPKAVYRDYSGSNNGSDTATDDSVGGNAIALASVELIVPTPFASEEARNQIRT 723
           G+      P+               A D+  GG +    S+E       A     + I  
Sbjct: 516 GYSYQEISPR--------------DADDELTGGRSYVSGSLE-------ARIAVTDTIGV 554

Query: 724 SIFYDMASVWDTEFDYRGKADYGNQYYYDYSDPTNYRSSYGVALQWVSPMGPLVFSLAKP 783
             F D  +V D+                D+SD    R+  G+ L++ +P GP+    A P
Sbjct: 555 VPFIDAGTVSDSTAP-------------DFSD---IRAGAGIGLRYATPFGPIRLDFAVP 598

Query: 784 IKKYEGDDEEFFTFTIGRTF 803
           + KY G  +      IG++F
Sbjct: 599 LNKYPGGTDYGIYAGIGQSF 618