Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 776 a.a., outer membrane transmembrane protein from Sinorhizobium meliloti 1021

 Score =  270 bits (689), Expect = 3e-76
 Identities = 209/788 (26%), Positives = 348/788 (44%), Gaps = 52/788 (6%)

Query: 21  AEKFVVQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVANIIKALYSSGNFEDVKVLRD 80
           A+  V+  +++ G  RV+       + +  G S  + D+   +K LY++G F DV +   
Sbjct: 36  AQAAVINRVEVRGATRVSAETVRANITIVPGKSFSNADIDASVKRLYATGYFSDVSITVS 95

Query: 81  GNTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIRVGEALDRTTLSNIEKGLEDF 140
           G +L+V V E   +  V F+GN+ IK+++L+  +    +  G   + T  ++I+  + D 
Sbjct: 96  GGSLVVSVSENQLVNQVVFNGNRKIKDDKLQGVVRTQPL--GPYSEATVETDIQ-AIRDA 152

Query: 141 YYSVGKYNATVKAVVTPLPRNRADLKFVFTEGVSAKIQQINFIGNQVFSDEELLSRFNLN 200
           Y ++G+ + TV   V P+   R +L FV  EG   KI QINF+GN+V+SD  L S     
Sbjct: 153 YAAIGRSDVTVTTQVVPIAEGRVNLAFVINEGERTKITQINFVGNEVYSDGRLQSVIATK 212

Query: 201 VDVAWWNFLADDKYKKQVLAGDIEALRTYYLDRGYLKFQVDSTQVAISPDKKGVYITLNL 260
               +      D Y    L  D E LR +Y +RGY  FQV S++ A++       +T+ +
Sbjct: 213 ESGIFSFLTRKDVYNPDKLRADEELLRQFYYNRGYADFQVVSSEAALNEATNEYTVTITI 272

Query: 261 NEGEPYTVSKVQFRGELMGKEAE-FTSLIPFEIGETYNGSAVTRLEESVKKVLGESGYAY 319
            EG  Y    V     + G +AE    L+    G  Y    +      + K +   GY +
Sbjct: 273 EEGPRYDFGPVNIESTVEGIDAEELRGLVQSREGTVYKAKDIQSTMSEISKRVASEGYPF 332

Query: 320 PQVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNSTRDEVLRREMRQMEGSWLNS 379
            +V      D     +++   V+ G+R YV  I   GN  TRD V+RRE    EG   N 
Sbjct: 333 ARVTPRGNRDLANHTIAVDYLVDQGERAYVERIEIRGNTRTRDYVIRREFDVGEGDAFNQ 392

Query: 380 KDIETGKTRLNRLGFFETVEVQTVRVPGS-EDQVDLVYSVKEANSGNVNFGVGYGTESGV 438
           + +   K RL  LG+F +V + T   PGS  D+V +V  V++ ++G+   G GY    G 
Sbjct: 393 EMVARAKRRLEALGYFSSVNIST--QPGSAADRVVIVVDVQDQSTGSFGIGAGYSAGDGG 450

Query: 439 SF--QVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNLDGVSLGGKVFYNQFEA 496
            F  +  +++ NFLG G  + + A   +  +   + + +PY+    ++ G  +F N+ + 
Sbjct: 451 GFLVEASIEEKNFLGRGQYIRLAAGKGEDSQTYNVSFTEPYFLGYRLAAGFDLFKNENDF 510

Query: 497 SEAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKIGNLTPYLQVENFLAAQASNI 556
            +    +Y+    G SL    P  E         YT         Y    + L++    +
Sbjct: 511 DDD---NYSYNDQGFSLRVTAPITENLSTTLRYNYTE------LEYFGDRDELSSPYDRV 561

Query: 557 DSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKMTVPGSDAQYFKLQYDVRQYF 616
             G         I+ S T N L+++  P  G       +    G  + ++KL    + Y+
Sbjct: 562 IDGSPWTRS--SISQSITYNTLDDAQLPHEGILASVTQEFAGLGGTSDFYKLTGKAKWYY 619

Query: 617 PLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYAGGFTSLRGFGSNSAGPKAVY 676
            L  + +    L G  G+     +T G   +F  ++         +RGF  N  GP+   
Sbjct: 620 TLHDEADIIGSLSGSAGH---LFETSGSLEVFDQFQL----NSNDIRGFERNGLGPR--- 669

Query: 677 RDYSGSNNGSDTATDDSVGGNAIALASVELIVPTPFASEEARNQIRTSIFYDMASVWDTE 736
                 NNG      D++GG     AS E   P P    +  +  R ++F D  +++  +
Sbjct: 670 -----MNNG------DALGGTTYFTASAEATFPLPGLPRD--SGFRGALFVDAGTLYGND 716

Query: 737 FDY-RGKADYGNQYYYDYSDPTNYRSSYGVALQWVSPMGPLVFSLAKPIKKYEGDDEEFF 795
            +   G++  G        D  + R+S GV+L W SP GPL    A P+ K + D+ + F
Sbjct: 717 VEIGPGESVRG--------DNASLRASVGVSLIWASPFGPLRVDYAVPVAKEDFDEVQNF 768

Query: 796 TFTIGRTF 803
            F I  +F
Sbjct: 769 KFGINSSF 776



 Score = 25.8 bits (55), Expect = 0.010
 Identities = 14/66 (21%), Positives = 25/66 (37%)

Query: 335 VSLVVHVEAGKRVYVRDIRFVGNNSTRDEVLRREMRQMEGSWLNSKDIETGKTRLNRLGF 394
           V LV      +   +  +   G      E +R  +  + G   ++ DI+    RL   G+
Sbjct: 27  VGLVAGTSVAQAAVINRVEVRGATRVSAETVRANITIVPGKSFSNADIDASVKRLYATGY 86

Query: 395 FETVEV 400
           F  V +
Sbjct: 87  FSDVSI 92