Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 844 a.a., surface antigen (RefSeq) from Shewanella amazonensis SB2B

 Score =  872 bits (2253), Expect = 0.0
 Identities = 427/816 (52%), Positives = 565/816 (69%), Gaps = 23/816 (2%)

Query: 11  LLATSVSANGAEK----FVVQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVANIIKAL 66
           LL  S S  G  +    F V DIQ++GLQRVALGAALL +P++VGD+VD   +   IK+L
Sbjct: 29  LLGASYSGTGLAETFAPFTVTDIQVEGLQRVALGAALLSLPIKVGDTVDQLKLQQAIKSL 88

Query: 67  YSSGNFEDVKVLRDGNTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIRVGEALD 126
           Y++ NF+ V V  D   L+V VKERPTI+ V+F GNK IK+EQL+++L+ S ++VGEALD
Sbjct: 89  YATTNFDTVSVANDDGVLVVTVKERPTISEVTFEGNKDIKDEQLQESLDNSGVKVGEALD 148

Query: 127 RTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRADLKFVFTEGVSAKIQQINFIGNQ 186
           RT LS IEKGL+DFYY VGKY A V+A V  LPRNR +LKF FTEG++A+I+QIN +GN 
Sbjct: 149 RTMLSGIEKGLQDFYYGVGKYGAKVEAQVINLPRNRVELKFKFTEGLAAEIRQINIVGNS 208

Query: 187 VFSDEELLSRFNLNVDVAWWNFLADDKYKKQVLAGDIEALRTYYLDRGYLKFQVDSTQVA 246
            FSD EL+    L   VAWW+   + +Y+KQ L  D+E ++T+Y + GY++F V STQVA
Sbjct: 209 KFSDAELIGMLELKDYVAWWDLFGERRYQKQKLQADLETIKTHYHNNGYIRFDVTSTQVA 268

Query: 247 ISPDKKGVYITLNLNEGEPYTVSKVQFRGELMGKEAEFTSLIPFEIGETYNGSAVTRLEE 306
           ++PD+KG+YIT+N++EGE Y V +V   G+LMG+E    +++P + G+ YNG+ VT  EE
Sbjct: 269 MTPDRKGLYITINVDEGEQYKVKEVNLTGDLMGREELMRAILPIKAGDQYNGADVTFTEE 328

Query: 307 SVKKVLGESGYAYPQVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNSTRDEVLR 366
              K LG  GYAYP+V+T PE DDE ++V+L V+V  GKRVYVR + F GN  T+DEVLR
Sbjct: 329 MYAKYLGRFGYAYPEVKTFPEIDDENKEVTLNVNVRPGKRVYVRSVNFTGNTVTKDEVLR 388

Query: 367 REMRQMEGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVKEANSGNV 426
           RE+RQMEG+WLNS ++E  K RLNRLGFFETV+ +TV+VPG++D VD+ + VKE  SG+ 
Sbjct: 389 RELRQMEGAWLNSANVELSKNRLNRLGFFETVDTETVQVPGTDDLVDVSFKVKEQPSGSF 448

Query: 427 NFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNLDGVSLG 486
           N G+GYGTESG+S Q G+QQ NFLG+GN+ G+N   N Y KN++L Y DPY+  DGVSLG
Sbjct: 449 NAGIGYGTESGISLQFGVQQSNFLGTGNQAGININTNKYSKNVSLSYSDPYFTKDGVSLG 508

Query: 487 GKVFYNQFEASEAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKIGNLTPYLQVE 546
           G +++N+F+A+EA +  Y N SYG +L+ GFP +E NR  FG+G+ HN I  ++ Y Q  
Sbjct: 509 GNIYWNEFDANEANLERYKNSSYGVALSSGFPVNEYNRLNFGVGFRHNTISEISAYEQAL 568

Query: 547 NFLAAQASNIDSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKMTVPGSDAQYF 606
            F        D   +L  ++F++N  W R+ LN   FPT G+ QR   KM+ PGSD QYF
Sbjct: 569 RFYNIYRDEDDPNSDLSFNNFELNAGWYRSTLNRGTFPTDGSSQRLSGKMSTPGSDLQYF 628

Query: 607 KLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYAGGFTSLRGFG 666
           K   D   YFPLT+ H F LL R R+GYGNGYG  +G D + PF+EN+Y+GG +SLRGF 
Sbjct: 629 KTDLDTNFYFPLTRSHSFVLLSRARIGYGNGYGDFNGNDQILPFWENYYSGGSSSLRGFK 688

Query: 667 SNSAGPKAVY---------RDYSGSN-------NGSDTATDDSVGGNAIALASVELIVPT 710
           SNS GP++ Y          D SG         N    +   S+GGNA+A ASVELIVPT
Sbjct: 689 SNSVGPRSFYVVRGSEPCSPDPSGDGCGLPGDPNQIQVSQGRSIGGNAVATASVELIVPT 748

Query: 711 PFASEEARNQIRTSIFYDMASVWDTEFDYRGKADYGNQYY---YDYSDPTNYRSSYGVAL 767
           PF  E   N +RTS F D  +VWDTEFDY        + +    DYSDP+  R+S+G+++
Sbjct: 749 PFLDEAYTNSVRTSFFVDAGNVWDTEFDYDKYRSLPAEEFAKLEDYSDPSRLRASWGMSV 808

Query: 768 QWVSPMGPLVFSLAKPIKKYEGDDEEFFTFTIGRTF 803
           QW+SPMGP+VFSLA PIK+YE D+ E F+F IG+TF
Sbjct: 809 QWLSPMGPMVFSLAWPIKEYEDDETEIFSFNIGKTF 844