Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 798 a.a., outer membrane protein Omp from Phaeobacter inhibens DSM 17395

 Score =  251 bits (641), Expect = 1e-70
 Identities = 198/787 (25%), Positives = 350/787 (44%), Gaps = 37/787 (4%)

Query: 21  AEKFVVQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVANIIKALYSSGNFEDVKVLRD 80
           A+ +   ++Q++G QR+     +    +  G SV +  + +  + +  SG FE V+++  
Sbjct: 45  AQSYSFTNVQVEGNQRIQTSTIVAYTGIERGKSVSAGQLNDAYQRILDSGVFESVEIVPQ 104

Query: 81  GNTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIRVGEALDRTTLSNIEKGLEDF 140
           GNTL+++V E PTI  +SF GN+ IK++ +   +E++  RV    + T        L + 
Sbjct: 105 GNTLVIKVTEFPTINKISFEGNRRIKDDAMLALIESAPRRV---FNPTVAERDASNLAEA 161

Query: 141 YYSVGKYNATVKAVVTPLPRNRADLKFVFTEGVSAKIQQINFIGNQVFSDEELLSRFNLN 200
           Y + G+  +TV   +     NR DL F  +EG + ++++++F+GN+V+SD  L       
Sbjct: 162 YGAQGRLASTVTPRIIRRSDNRVDLVFEISEGDTIEVERVSFVGNRVYSDRRLRRVLETK 221

Query: 201 VDVAWWNFLADDKYKKQVLAGDIEALRTYYLDRGYLKFQVDSTQVAISPDKKGVYITLNL 260
                  F+  D   +  L  D + LR +YL RGY+  +++ST   ++ ++   ++ +++
Sbjct: 222 QAGLLRTFIRADTLIEDRLEFDKQVLRDFYLSRGYVDVRINSTNAEVTEERDAAFLVVDI 281

Query: 261 NEGEPYTVSKVQFRGELMGKEA-EFTSLIPFEIGETYNGSAVTRLEESVKKVLGESGYAY 319
            EG+ +   ++    E+   +A EF  ++    G TY+ S +      ++      G  +
Sbjct: 282 TEGQQFEFGEISVTSEMSEADADEFRKVLKVRPGVTYSPSVIENAIRRLETFAIRKGIDF 341

Query: 320 PQVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNSTRDEVLRREMRQMEGSWLNS 379
            +V      +D    + +   +  G RV+V  I   GN +T D V+R++ R +EG   N 
Sbjct: 342 LRVEPRISRNDRDLTLDVDFVLTRGPRVFVERIDIEGNTTTLDRVIRQQFRTVEGDPFNP 401

Query: 380 KDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVKEANSGNVNFGVGYGTESGVS 439
           ++I     R+  LGFFET EV  VR  GS  +V +   V+E  +G ++ G  Y    G  
Sbjct: 402 REIRESAERIRALGFFETAEVD-VREGGSAGEVVVDVDVEEKPTGALSLGGAYSVNDGFG 460

Query: 440 FQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNLDGVSLGGKVFYNQFEASEA 499
             +GL ++NFLG G R+  N       +  TL + +PY     +     + Y + ++S A
Sbjct: 461 ISLGLSENNFLGRGQRLSFNISTAQDAEEYTLGFTEPYLLGRDLRFDLDLGYAETDSSFA 520

Query: 500 GIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKIGNLTPYLQVENFLAA---QASNI 556
            + D     +  +LT    F         + YT ++   ++       F  A     S I
Sbjct: 521 -LYDTKRAFFSPALT----FQTSENSNLQVRYTWDEDEMISRGDDSSGFPLAGPLVRSEI 575

Query: 557 DSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKMTVPGSDAQYFKLQYDVRQYF 616
           + G     +   I  ++T ++  N   P +G   +        G D++Y +      ++ 
Sbjct: 576 NQGA---INASTIGFTYTVDSRLNGLDPNSGYLIQVGADYAGLGGDSEYLR---STAKFI 629

Query: 617 PLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYAGGFTSLRGFGSNSAGPKAVY 676
              +     + LR  +  G    Q DG    F    + +    + LRGF     GP+   
Sbjct: 630 AQRRVFNEEVTLRATIEAGAFSWQGDG----FSRSIDRFVLSPSILRGFEPGGIGPR--- 682

Query: 677 RDYSGSNNGSDTATDDSVGGNAIALASVELIVPTPFASEEARNQIRTSIFYDMASVWDTE 736
                S NGS    +D +GGN  A A  +   P     E     +R  +FYD+ ++W   
Sbjct: 683 ---DQSPNGSGGNYNDFLGGNYYAAARFDAEFPLGLPEEIG---LRGGLFYDVGNLWGL- 735

Query: 737 FDYRGKADYGNQYYYDYSDPTNYRSSYGVALQWVSPMGPLVFSLAKPIKKYEGDDEEFFT 796
                 AD G           +YR   G +L W +  GPL F+ +K +KK + D E+ F 
Sbjct: 736 ----NNADTGAAGGNIVGRGGSYRHVVGFSLLWTTGFGPLRFNFSKALKKEDFDQEQSFD 791

Query: 797 FTIGRTF 803
            T+   F
Sbjct: 792 LTLQARF 798