Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 827 a.a., surface antigen (D15) (RefSeq) from Shewanella loihica PV-4

 Score =  876 bits (2264), Expect = 0.0
 Identities = 433/823 (52%), Positives = 572/823 (69%), Gaps = 27/823 (3%)

Query: 7   LLATLLATSVSANGA------EKFVVQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVA 60
           + A++L    S +G       + F V DIQ+ GLQRVALGAALL +P++VGD+VD   + 
Sbjct: 6   IFASMLLVGASLSGKGWADTFQPFEVTDIQVKGLQRVALGAALLNIPIKVGDTVDEMRLQ 65

Query: 61  NIIKALYSSGNFEDVKVLRDGNTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIR 120
             IK+LYSS NFE ++V RDG+ L+V VKERPTI+ V+F GNK IK+EQL+++L+ S ++
Sbjct: 66  QAIKSLYSSTNFEHIEVSRDGSVLVVTVKERPTISVVTFEGNKDIKDEQLQESLDGSGVK 125

Query: 121 VGEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRADLKFVFTEGVSAKIQQI 180
            GE+LDRT LS IEK L+DFYY VGKY A V+A V  LPRNR +LKF FTEG++A+I+QI
Sbjct: 126 AGESLDRTMLSGIEKSLQDFYYGVGKYGAKVEAQVINLPRNRVELKFKFTEGLAAEIRQI 185

Query: 181 NFIGNQVFSDEELLSRFNLNVDVAWWNFLADDKYKKQVLAGDIEALRTYYLDRGYLKFQV 240
           N +GN VFSD EL+    L   VAWW+   + +Y+KQ L  D+E ++T+Y +RGY++F+V
Sbjct: 186 NVVGNTVFSDAELIGMLELKDYVAWWDLFGERRYQKQKLQADLETIKTFYHNRGYIRFEV 245

Query: 241 DSTQVAISPDKKGVYITLNLNEGEPYTVSKVQFRGELMGKEAEFTSLIPFEIGETYNGSA 300
            STQVA++PD+KG+YIT+N++EGE Y V +V   G+LMG+E    +++P ++G+TYNG+ 
Sbjct: 246 TSTQVAMTPDRKGLYITINVDEGEQYKVKEVNLTGDLMGREEVMQAILPIKVGDTYNGAD 305

Query: 301 VTRLEESVKKVLGESGYAYPQVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNST 360
           VT  EE   K LG  GYAYP+V+T PE DDE ++V+L V+++ GKRVYVR I F GN  T
Sbjct: 306 VTFTEEMYGKYLGRFGYAYPEVKTYPEIDDETKEVALNVNIKPGKRVYVRSINFTGNQVT 365

Query: 361 RDEVLRREMRQMEGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVKE 420
           +DEV+RRE+RQMEG+WLNS  +E  K RLNRLG+FETV+ QTV+VPG++D VD+ ++VKE
Sbjct: 366 KDEVMRRELRQMEGAWLNSAQVEQSKARLNRLGYFETVDTQTVQVPGTDDLVDVDFTVKE 425

Query: 421 ANSGNVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNL 480
             SG+ N GVGYGTESG+S Q G+QQ NFLG+GN+ G+N   N Y KN+ + Y DPY+  
Sbjct: 426 QPSGSFNAGVGYGTESGLSLQFGVQQSNFLGTGNQAGINLNTNKYSKNVNINYTDPYFTK 485

Query: 481 DGVSLGGKVFYNQFEASEAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKIGNLT 540
           DGVSLGG +++N+F+A EA +  Y N SYG ++  GFP +E NR   GIGY HN I  ++
Sbjct: 486 DGVSLGGSIYWNEFDAQEANLERYKNSSYGIAVNSGFPINEYNRINGGIGYRHNSISEIS 545

Query: 541 PYLQVENFLAAQASNIDSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKMTVPG 600
            Y Q   F        D   +L  D+F++ L W R+ LN   FPT G+ QR   KMTVPG
Sbjct: 546 AYEQALRFYNIYRDANDPNADLSFDNFELTLGWYRSTLNRGTFPTDGSSQRLSGKMTVPG 605

Query: 601 SDAQYFKLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYAGGFT 660
           SD QYFK  +D   Y+P+ + H F LL + RLGYGNGYGQ +  D + PF+EN+Y+GG +
Sbjct: 606 SDLQYFKTDFDTSFYWPINRSHSFVLLTKARLGYGNGYGQYNDNDQILPFWENYYSGGSS 665

Query: 661 SLRGFGSNSAGPKAVYRDYSGS-----NNGSDTAT------------DDSVGGNAIALAS 703
           SLRGF SNS GP++ Y  Y GS     +   DT T              S+GGNAIA AS
Sbjct: 666 SLRGFKSNSVGPRSFYL-YRGSEPCSPDPAGDTCTLPGDPNRVTVSGGRSIGGNAIATAS 724

Query: 704 VELIVPTPFASEEARNQIRTSIFYDMASVWDTEFDYRGKADYGNQYY---YDYSDPTNYR 760
           VE+IVPTPF  E   N +RTS F D  +VWDTEFDY        + +    DYSDP   R
Sbjct: 725 VEMIVPTPFLDEAYTNSVRTSFFVDAGNVWDTEFDYDAYRFLPAEQFDKLSDYSDPGRIR 784

Query: 761 SSYGVALQWVSPMGPLVFSLAKPIKKYEGDDEEFFTFTIGRTF 803
           +S G+++QW+SPMGP+VFSLA PIKKYE DD E F+F IG+TF
Sbjct: 785 ASAGMSVQWLSPMGPMVFSLAWPIKKYEDDDTEIFSFNIGKTF 827