Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 618 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 64.7 bits (156), Expect = 1e-14
 Identities = 64/241 (26%), Positives = 109/241 (45%), Gaps = 20/241 (8%)

Query: 107 EEQLKQNLEA--SSIRVGEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRAD 164
           +E LK+N+ A   ++   E   R  L N+E  +     S+G Y+  V+  +    +   +
Sbjct: 42  DEALKRNILAHLGAMPDSEVQRRAFLFNVEDNVTTALQSMGYYHGEVEDHLVEKDKGPWE 101

Query: 165 LKFVFTEGVSAKIQ--QINFIGNQVFSDEELLSRFNLNVDVAWWNFLADDKYKKQVLAGD 222
           L      G   KIQ   INF G  +  D+    ++  +V++   + L    Y       D
Sbjct: 102 LTLTVKAGEPVKIQWVDINFSGEML--DDRAFDKWLADVNIKPGDTLNHGMYS------D 153

Query: 223 IEA-LRTYYLDRGYLKFQVDSTQVAISPDKKGVYITLNLNEGEPYTVSKVQFRGELMGKE 281
           +++ L T  L RGY   +   +Q+ I+ D     I+L+ N G  Y   +V F G  +  +
Sbjct: 154 VKSQLVTLALARGYFDGEFTESQIKINRDLNTAQISLHFNSGARYHFGQVSFEGHTLEPD 213

Query: 282 AEFTSLIPFEIGETYNGSAVTRLEESVKKVLGESGYAYPQVRTIPEFDDEKQQVSLVVHV 341
              T LIPF+   +Y+    TR   ++ + L ++GY +  ++ IP+ D  K    L V V
Sbjct: 214 I-LTKLIPFKEDASYS----TRRVSALNRQLLDTGY-FSNIKVIPQLDLAKDN-QLPVKV 266

Query: 342 E 342
           E
Sbjct: 267 E 267



 Score = 47.0 bits (110), Expect = 3e-09
 Identities = 121/633 (19%), Positives = 226/633 (35%), Gaps = 127/633 (20%)

Query: 209 LADDKYKKQVLAGDIEA-LRTYYLDRGYLKFQVDSTQVAISPDKKGVYITLNLNEGEPYT 267
           + D + +++    ++E  + T     GY   +V+   V    DK    +TL +  GEP  
Sbjct: 56  MPDSEVQRRAFLFNVEDNVTTALQSMGYYHGEVEDHLV--EKDKGPWELTLTVKAGEPVK 113

Query: 268 VS--KVQFRGELMGKEA--EFTSLIPFEIGETYNGSAVTRLEESVKKVLGESGY---AYP 320
           +    + F GE++   A  ++ + +  + G+T N    + ++  +  +    GY    + 
Sbjct: 114 IQWVDINFSGEMLDDRAFDKWLADVNIKPGDTLNHGMYSDVKSQLVTLALARGYFDGEFT 173

Query: 321 QVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNSTRDEVLRREMRQMEGSWLNSK 380
           + +     D    Q+SL  H  +G R +   + F G+    D +L + +   E +  +++
Sbjct: 174 ESQIKINRDLNTAQISL--HFNSGARYHFGQVSFEGHTLEPD-ILTKLIPFKEDASYSTR 230

Query: 381 DIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVKEANSGNVNFGVGYGTESGVSF 440
            +     +L   G+F  ++V    +P    Q+DL    +      +     +  E G+  
Sbjct: 231 RVSALNRQLLDTGYFSNIKV----IP----QLDLAKDNQLPVKVELTNKASHSIELGLGG 282

Query: 441 QVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNLDGVSLGGKVFYNQFEASEAG 500
            +G   D                 +   + + +R P  N  G S    + ++        
Sbjct: 283 DIGQSSDK---------------TFDPRVRVTWRTPQINKYGHSQETSLEWSPDRPKFL- 326

Query: 501 IVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKIGNLTPYLQVENFLAAQASNIDSGG 560
                  +Y   LT   P D+  + +  +G   +K G +T   + EN        ++S  
Sbjct: 327 ------TTYTIPLT--HPLDD--QLKIRLGLQRDKYG-VTQIYEPENRDFRNTGQLESTK 375

Query: 561 NLL--------------------------TDDFDINLSWTRNNLN--------NSYFPTA 586
            LL                            D D N S+    +N        NS  P +
Sbjct: 376 YLLGLLRQQRLDNQWLMSYSLDAIREEYTQSDVDYNPSFYLAGINFSKTTRGDNSLDPKS 435

Query: 587 GNHQRAFYKMTVP--GSDAQYFKLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGK 644
           G  Q        P  GS+ +  +LQ   +        H     +       N     + +
Sbjct: 436 GYRQTYSLDYADPYLGSETRLARLQAKFKWIDTFFDNHRIVARMDLAANLAN-----EDE 490

Query: 645 DNLFPFYENFYAGGFTSLRGFGSNSAGPKAVYRDYSGSNNGSDTATDDSVGGNAIALASV 704
             L P    ++AGG  ++RG+G    GP   Y D  G+ N       + +GG  + + SV
Sbjct: 491 LALIPPSLRYFAGGDQTIRGYGYQELGPYLDYIDADGNVN------REVIGGRYLMVGSV 544

Query: 705 E---LIVPTPFASEEARNQIRTSIFYDMASVWDTEFDYRGKADYGNQYYYDYSDPTNYRS 761
           E    + PT           R + F D  + +D            NQ+     +P     
Sbjct: 545 EYQYYVTPT----------WRVATFVDAGNAFD-----------NNQF-----EPV---V 575

Query: 762 SYGVALQWVSPMGPLVFSLAKPIKKYEGDDEEF 794
           S G  + W+SP+GP+   L   +K+ +  D  +
Sbjct: 576 SVGGGIHWISPIGPIKLDLGVGLKETDTIDRSW 608