Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 826 a.a., bacterial surface antigen (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  870 bits (2249), Expect = 0.0
 Identities = 427/822 (51%), Positives = 565/822 (68%), Gaps = 26/822 (3%)

Query: 7   LLATLLATSVSANGA------EKFVVQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVA 60
           L A++L    S +G       + F V DIQ++GLQRVALGAALL +PV+VGD+VD   + 
Sbjct: 6   LFASMLFVGASFSGTVLADTFQPFEVTDIQVEGLQRVALGAALLSLPVKVGDTVDQLKLQ 65

Query: 61  NIIKALYSSGNFEDVKVLRDGNTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIR 120
             IK+LY+S NFE++ V  +   L+V+V ERPTI++V+F GNK IK+EQL+++L+ S ++
Sbjct: 66  QAIKSLYASTNFENISVSHEDGVLIVKVTERPTISAVTFEGNKDIKDEQLQESLDGSGVK 125

Query: 121 VGEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRADLKFVFTEGVSAKIQQI 180
           VGE+LDRT L+ IEKGL+DFYY VGKY A V+A V  LPRNR +LKF FTE ++A+I+QI
Sbjct: 126 VGESLDRTMLTGIEKGLQDFYYGVGKYGAKVEAQVINLPRNRVELKFKFTESLAAEIRQI 185

Query: 181 NFIGNQVFSDEELLSRFNLNVDVAWWNFLADDKYKKQVLAGDIEALRTYYLDRGYLKFQV 240
           N +GN  F+D EL+    L   VAWW+   + +Y+KQ L  D+E ++TYY ++GY++F+V
Sbjct: 186 NVVGNHEFTDAELIGMLELKDYVAWWDLFGERRYQKQKLQADLETIKTYYHNKGYIRFEV 245

Query: 241 DSTQVAISPDKKGVYITLNLNEGEPYTVSKVQFRGELMGKEAEFTSLIPFEIGETYNGSA 300
            STQVA++PD+KG+YIT+N+NEGE Y V  V   G+LMG+E    S++P + G+ YNG  
Sbjct: 246 TSTQVAMTPDRKGLYITINVNEGEKYKVKDVNLTGDLMGREELMKSILPIKAGDMYNGGD 305

Query: 301 VTRLEESVKKVLGESGYAYPQVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNST 360
           VT  EE   K LG  GYAYP+V+T PE DD+ ++V+L ++++ GKRVYVR I F GN  T
Sbjct: 306 VTFAEEMYSKYLGRFGYAYPEVKTYPEIDDKTKEVTLNINIKPGKRVYVRSINFTGNTVT 365

Query: 361 RDEVLRREMRQMEGSWLNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVKE 420
            DEV+RRE+RQMEG+WLNS  +E  K RLNRLGFFETV+ +T++VPG++D VD+   VKE
Sbjct: 366 EDEVMRRELRQMEGAWLNSAQVEQSKARLNRLGFFETVDTETIQVPGTDDLVDVAVKVKE 425

Query: 421 ANSGNVNFGVGYGTESGVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNL 480
             SG+ N GVGYGTESG+S Q G+QQ+NFLG+GN+ GV+   N Y KN+ L Y DPYW  
Sbjct: 426 QPSGSFNAGVGYGTESGLSLQFGVQQNNFLGTGNQAGVSLSTNKYSKNVNLSYTDPYWTK 485

Query: 481 DGVSLGGKVFYNQFEASEAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKIGNLT 540
           DGVSLGG V++N+F+A+EA +  Y N SYG +L  GFP +E NR   GIGY HN I  ++
Sbjct: 486 DGVSLGGSVYWNEFDANEANLERYKNSSYGVALNSGFPINEYNRINGGIGYRHNTISEIS 545

Query: 541 PYLQVENFLAAQASNIDSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKMTVPG 600
            Y Q   F      + D   +L  D+F+++L W R+ LN   FPT G+ QR   KMTVP 
Sbjct: 546 AYEQALRFYNIYRDD-DPNADLSFDNFELSLGWYRSTLNRGTFPTDGSSQRLSGKMTVPA 604

Query: 601 SDAQYFKLQYDVRQYFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYAGGFT 660
           SD QYFK  +D   YFP+ +   F LL RGRLGYGNGYGQ +  D + PF+EN+Y+GG +
Sbjct: 605 SDLQYFKTDFDTNYYFPINRSQSFVLLARGRLGYGNGYGQYNDNDQILPFWENYYSGGSS 664

Query: 661 SLRGFGSNSAGPKAVYR----------------DYSGSNNGSDTATDDSVGGNAIALASV 704
           SLRGF SNS GP++ Y                    G  N    ++  S+GGNAIA AS+
Sbjct: 665 SLRGFKSNSVGPRSFYLFRGSEPCSPDPSGDGCSLPGDPNKIQVSSGRSIGGNAIATASL 724

Query: 705 ELIVPTPFASEEARNQIRTSIFYDMASVWDTEFDYRGKADYGNQYY---YDYSDPTNYRS 761
           ELIVPTPF  E   N +RTS F D  +VWDTEFDY        + +    DYSDP   R+
Sbjct: 725 ELIVPTPFLDEAYTNSVRTSFFVDAGNVWDTEFDYAKYQTLPAEEFDKLQDYSDPARIRA 784

Query: 762 SYGVALQWVSPMGPLVFSLAKPIKKYEGDDEEFFTFTIGRTF 803
           S+GV+LQW+SPMGP+VFSLA P+K+YEGD  E F+F IG+TF
Sbjct: 785 SWGVSLQWLSPMGPMVFSLAWPVKEYEGDQTEIFSFNIGKTF 826