Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 896 a.a., outer membrane protein, OMP85 family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  194 bits (493), Expect = 2e-53
 Identities = 184/794 (23%), Positives = 328/794 (41%), Gaps = 79/794 (9%)

Query: 26  VQDIQIDGLQRVALGAALLKMPVRVGDSVDSQDVANIIKALYSSGNFEDVKVL----RDG 81
           + D+++ G + +     L+++  R GD +D   +   IK ++  G F DV+       DG
Sbjct: 166 IADVKVRGTKVLDPDVVLMRLSTRKGDPIDPAAINKEIKRIWDLGYFSDVQASVEQGGDG 225

Query: 82  NTLMVQVKERPTIASVSFSGNKAIKEEQLKQNLEASSIRVGEALDRTTLSNIEKGLEDFY 141
             L+  V E+P I ++   G+  +  + +   L A S + G  L+   L+   + + + Y
Sbjct: 226 TVLVYTVTEKPRIDNIVIEGSDKVGHDDI---LAAMSSKTGSVLNDKLLAQDLQKVTELY 282

Query: 142 YSVGKYNATVK-AVVTPLPRNRADLKFVFTEGVSAKIQQINFIGNQVFSDEELLSRFNLN 200
              G Y A V   V        A L     EG    I+++   G +  S+ E+     L+
Sbjct: 283 RKEGFYLAHVTHRVEARQGAASATLVLNVEEGNKLYIKKVKIEGLKELSESEVKDILALS 342

Query: 201 VDVAWWNFLADDKYKKQVLAGDIEALRTYYLDRGYLKFQVDSTQVAISPDKKGVYITLNL 260
               +  F      K ++L  D  A+  Y L+ GY+   V + +V    D  G+ ++  +
Sbjct: 343 ERGMFSWFTGTGVLKDELLERDSAAITAYCLNHGYVDALVSAPKVDYEED--GIIVSFAV 400

Query: 261 NEGEPYTVSKVQFRGELMGKEAEFTSLIPFEIGETYNGSAVTRLEESVKKVLGES----G 316
            EG  Y + K+ F GEL+  +     ++  +  +  N      + ++  K+L +     G
Sbjct: 401 KEGPRYKLGKIGFDGELIDTDERLLKVVKLDDHKKDNQYFALDVMQTDDKLLSDYYADYG 460

Query: 317 YAYPQVRTIPEFDDEKQQVSLVVHVEAGKRVYVRDIRFVGNNSTRDEVLRREMRQMEGSW 376
           YA+ ++ +  +   E+  + +   +   ++VY+  +   GN  TRD V+ REMR  +G  
Sbjct: 461 YAFAEINSRTQKSAEEHVIDVTYVIRKRQKVYINRVLVEGNQKTRDNVVLREMRIADGDM 520

Query: 377 LNSKDIETGKTRLNRLGFFETVEVQTVRVPGSEDQVDLVYSVKEANSGNVNFGVGYGTES 436
                +     RLNR  +F  V+ + V     ED+VDL   VKE N+G +  GVGY T  
Sbjct: 521 FEGAKLRRSNERLNRTRYFSQVDTELVPTQ-KEDEVDLKVKVKEQNTGALIGGVGYSTFY 579

Query: 437 GVSFQVGLQQDNFLGSGNRVGVNAMINDYQKNLTLEYRDPYWNLDGVSLGGKVFYNQFEA 496
                  + + N  G G    + A  +  + +    + +P  N   +S G     N    
Sbjct: 580 QFGVSGTIMERNLFGKGYYASLQAFFSGKRNSFIASFTNPRVNDGDLSFG-----NDAYI 634

Query: 497 SEAGIVDYTNESYGTSLTWGFPFDELNRFEFGIGYTHNKIGNLTPYLQVENFLAAQASNI 556
           S     D++  + G ++ +  P  E +   +G      ++ ++          AA+    
Sbjct: 635 SREYFDDFSKNTIGDTIRFALPVGEYSTVGWGYRLDRYELYDIDDD-------AAKIIKE 687

Query: 557 DSGGNLLTDDFDINLSWTRNNLNNSYFPTAGNHQRAFYKM--TVPGSDAQYFKLQYDVRQ 614
             G N+ +     ++ +TR+  ++   PT G   + F +      G D  + K   + + 
Sbjct: 688 REGENISS---VAHVRFTRDTTDSKEKPTKGTIFKTFNEFGGGPIGGDDDFIKPVVEFQA 744

Query: 615 YFPLTKKHEFTLLLRGRLGYGNGYGQTDGKDNLFPFYENFYAGGFTSLRGFGSNSAGPKA 674
           Y  L   H      RG     NG G         P +E FY GG  S+RG+ S    P+ 
Sbjct: 745 YHQLAPNHVLHGRTRGGAVLENGQGDV-------PVFERFYIGGIDSIRGYNSRDISPR- 796

Query: 675 VYRDYSGSNNGSDTATDDSVGGNAIALASVELI-VPTPFASEEARNQIRTSIFYDMASVW 733
                       D  + D +GG+ +A  ++E I V  P         +    F+DM   +
Sbjct: 797 ------------DPESGDRIGGDRMAFVNLEYIWVFKPDLG------LALVPFFDMGINY 838

Query: 734 DTEFDYRGKADYGNQYYYDYSDPTNYRSSYGVALQWVSPMGPLVFSLAKPIKKYEGDDEE 793
           D+  +            +++ D    + S G+ ++W SPMG L F+   P+   EG D E
Sbjct: 839 DSSAE------------FNWDD--ELKKSVGLEMRWRSPMGDLRFAYGFPLD--EGRDGE 882

Query: 794 ----FFTFTIGRTF 803
                F F++G+ F
Sbjct: 883 QHSGRFEFSMGQFF 896