Pairwise Alignments

Query, 803 a.a., outer membrane protein assembly factor BamA from Vibrio cholerae E7946 ATCC 55056

Subject, 591 a.a., surface antigen (D15) (RefSeq) from Shewanella sp. ANA-3

 Score = 70.9 bits (172), Expect = 2e-16
 Identities = 67/240 (27%), Positives = 103/240 (42%), Gaps = 18/240 (7%)

Query: 107 EEQLKQNLEA--SSIRVGEALDRTTLSNIEKGLEDFYYSVGKYNATVKAVVTPLPRNRAD 164
           +E LK+N+ A   ++   E   R  L N+E  +     S+G Y+  V+  +    +   +
Sbjct: 15  DEALKRNILAHLGAMPDSEVQRRAFLFNVEDNVSTALESMGYYHGEVEEQLVEKEKGPWE 74

Query: 165 LKFVFTEGVSAKIQ--QINFIGNQVFSDEELLSRFNLNVDVAWWNFLADDKYKKQVLAGD 222
           LK     G   KIQ   INF G  +  D+    ++   V     N    D     V A  
Sbjct: 75  LKLTVKAGEPVKIQWVDINFSGEML--DDRAFDKWLAEV-----NIKPGDTLNHGVYADV 127

Query: 223 IEALRTYYLDRGYLKFQVDSTQVAISPDKKGVYITLNLNEGEPYTVSKVQFRGELMGKEA 282
              L T  L RGY   +   +Q+ I+ D     I+L+ N G  Y   +V F G  +  + 
Sbjct: 128 KSQLVTLALARGYFDGEFTESQIKINRDLNTAQISLHFNSGARYRFGQVSFEGHTLEPDI 187

Query: 283 EFTSLIPFEIGETYNGSAVTRLEESVKKVLGESGYAYPQVRTIPEFDDEKQQVSLVVHVE 342
             T LIPF+    Y+    TR   S+ + L ++GY +  ++ IP+ D  K    L V VE
Sbjct: 188 -LTKLIPFKEDAAYS----TRRVSSLNRQLLDTGY-FANIKVIPQIDQAKDN-QLPVKVE 240



 Score = 40.4 bits (93), Expect = 3e-07
 Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 38/144 (26%)

Query: 654 FYAGGFTSLRGFGSNSAGPKAVYRDYSGSNNGSDTATDDSVGGNAIALASVE---LIVPT 710
           ++AGG  ++RG+G    GP   Y D  G  N       + +GG  + + S+E    + PT
Sbjct: 473 YFAGGDQTIRGYGYQELGPYLDYIDADGKVN------REVIGGRYLMVGSLEYQYYVTPT 526

Query: 711 PFASEEARNQIRTSIFYDMASVWDTEFDYRGKADYGNQYYYDYSDPTNYRSSYGVALQWV 770
                      R + F D  + +D            NQ+     +P     S G  + W+
Sbjct: 527 ----------WRVATFVDAGNAFD-----------NNQF-----EPV---VSVGGGIHWI 557

Query: 771 SPMGPLVFSLAKPIKKYEGDDEEF 794
           SP+GP+   L   +K+ +  D  +
Sbjct: 558 SPIGPIKLDLGVGLKETDTIDRSW 581