Pairwise Alignments

Query, 206 a.a., ribonuclease HII from Vibrio cholerae E7946 ATCC 55056

Subject, 215 a.a., RNase HII from Synechococcus elongatus PCC 7942

 Score =  139 bits (350), Expect = 4e-38
 Identities = 87/181 (48%), Positives = 112/181 (61%), Gaps = 5/181 (2%)

Query: 21  IAGVDEVGRGPLVGDVVTAAVILDPNR--PIM--GLNDSKKLSEKKRLALFPEIQVKALA 76
           +AGVDEVGRG L G VVTAAVIL      P+   G+ DSK+LS+++R  L+P I   ALA
Sbjct: 21  VAGVDEVGRGCLFGPVVTAAVILPETAIAPLQQAGVTDSKRLSQRQRQQLYPLICEVALA 80

Query: 77  WAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK-IPKLPMEAQAVVKGD 135
              G  S  EI+  NI QAT +AM+RA+A L       LIDGN+ +P+L      V++GD
Sbjct: 81  TGWGLASVAEIERWNILQATFLAMRRAIAKLDRPISRCLIDGNQQVPQLTYPQTTVIQGD 140

Query: 136 LRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFAAIEQHGVIEQHRKS 195
                I+AASI+AKV RD+ +E LD++YP +   +HKGY TA H  AI Q G    HR  
Sbjct: 141 RHCITIAAASILAKVWRDRLIERLDERYPGYALGRHKGYGTAQHRQAILQLGPTPLHRIR 200

Query: 196 F 196
           F
Sbjct: 201 F 201