Pairwise Alignments

Query, 206 a.a., ribonuclease HII from Vibrio cholerae E7946 ATCC 55056

Subject, 208 a.a., ribonuclease H (RefSeq) from Shewanella loihica PV-4

 Score =  262 bits (670), Expect = 3e-75
 Identities = 133/185 (71%), Positives = 153/185 (82%), Gaps = 3/185 (1%)

Query: 22  AGVDEVGRGPLVGDVVTAAVILDPNRPIMGLNDSKKLSEKKRLALFPEIQVKALAWAVGR 81
           AGVDEVGRGPLVGDVVTAAV+LDPN PI GLNDSKKLSEKKR AL+ EI  KAL  +VGR
Sbjct: 21  AGVDEVGRGPLVGDVVTAAVVLDPNNPIEGLNDSKKLSEKKRDALYEEILAKALDVSVGR 80

Query: 82  CSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNKIPKL---PMEAQAVVKGDLRV 138
           CSP EIDELNI  ATM+AMQRAVAGLR +PD VLIDGN++P      +E  AV+KGD  +
Sbjct: 81  CSPLEIDELNILHATMLAMQRAVAGLRARPDRVLIDGNRVPDFTDETLEGHAVIKGDGLI 140

Query: 139 AQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTAAHFAAIEQHGVIEQHRKSFGP 198
             ISAASI+AKV+RD+EMEALD++YP++GFAKHKGYPT AHF A+E HGV+ +HRKSF P
Sbjct: 141 PAISAASIVAKVVRDREMEALDERYPEYGFAKHKGYPTKAHFEALEAHGVLAEHRKSFRP 200

Query: 199 VKRAL 203
           VK  L
Sbjct: 201 VKERL 205