Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1025 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Pseudomonas fluorescens FW300-N2E2

 Score =  378 bits (970), Expect = e-108
 Identities = 306/1061 (28%), Positives = 505/1061 (47%), Gaps = 85/1061 (8%)

Query: 5    KFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKP 64
            ++  L   S+FS   G S    L ++    G  A+A+TD   L G+V+ +  A    ++ 
Sbjct: 4    EYAELHCLSNFSFQRGASSALELCRRAKQQGYQALAITDECTLAGIVRAWQAAKELELQL 63

Query: 65   IIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEH 124
            I+G++  +++        KL LL ++  GY+ L  LI++A  R    H  ++ + +  + 
Sbjct: 64   IVGSEIQVENGP------KLVLLVEDLEGYQALCRLITRARRRSEKGHYRIVREDF-DQP 116

Query: 125  AEGLIVL---SGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESY 181
              GL+ L    G  + E GR L               Q  FA   +L +      D+   
Sbjct: 117  LSGLLALWIAEGKDAEEHGRWL---------------QPTFAGRLWLTVQLHCAQDDRRR 161

Query: 182  LHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLR 241
            L  +L +AE+ DLP+VA+ +V           +   AI    T+ +  +  + + +++LR
Sbjct: 162  LADSLALAERLDLPIVASGDVHMHVRGRRALQDTMTAIRHHVTVAEAGQRLHPNGERHLR 221

Query: 242  SEAEMCELFADIPEALAN-SVEIAKRCNVTVRLGEYFLPN-FPTGGMAIEDFLVMKSREG 299
            S  ++ +L+   P AL + ++ IA+RC   +    Y  P      G     +L   +  G
Sbjct: 222  SRKDLADLY---PRALLDETLNIARRCTFDLGQLRYQYPRELVPEGHDPASWLRELTERG 278

Query: 300  LEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVG 359
            + ER +    D +VRA+        +  EL +I ++G+  YFL V + + +++   I + 
Sbjct: 279  MRERWKDGVTD-KVRAQ--------IDKELSLIAELGYDSYFLTVQDIVSFARSRHI-LC 328

Query: 360  PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 419
             GRGS A S V YAL IT++DP    LLFERFL+ ER   PD DVDF  D+R++V+ +V 
Sbjct: 329  QGRGSAANSAVCYALGITEIDPSLTSLLFERFLSRERNEPPDIDVDFEHDRREEVLQYVF 388

Query: 420  EMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEP 479
            + YGR   +      +      +RDV + LG P   V+ ++       G   ++A   E 
Sbjct: 389  QRYGRHRAALTAVVSSYHGAGAVRDVAKALGLPPDQVNALADCC----GRWSDEAPPVER 444

Query: 480  ALQELYDADEEV-KELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPV 538
              +  +D D  V + ++   R L G  R+  +H GG VIS   +    P+   A     +
Sbjct: 445  LREGGFDPDSPVLRRVLSLTRQLIGFPRHLSQHPGGFVISEQPLDTLVPVENAAMAERTI 504

Query: 539  TQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFR 598
             Q+DK+D++  GL+K D L L  L+ I     L+    ++       + ++P DD  ++ 
Sbjct: 505  IQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLI----ERYRGQRYALASLPQDDRATYE 560

Query: 599  NLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGR 658
             +  A T  VFQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q GMV  ++ R++  
Sbjct: 561  MISRADTIGVFQIESRAQMSMLPRLRPKTFYDLVIEVAIVRPGPIQGGMVHPYLRRRNKE 620

Query: 659  EAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKP 717
            EA++YP      E+LK++L  T G+ L+QEQVMQIA V + YT G AD LRR+M   K+ 
Sbjct: 621  EAVTYPS-----EALKQVLNRTLGVPLFQEQVMQIAIVAADYTPGEADQLRRSMAAWKRH 675

Query: 718  EEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTH 777
              +   R    +G +KNG   E A +IF+ ++ F  YGF +SH+A++AL++Y + WLK H
Sbjct: 676  GGLEPHRERLAQGMKKNGYTAEFAAQIFEQIKGFGNYGFPESHAASFALLTYASSWLKCH 735

Query: 778  YPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDD----NGAIVY 833
             PA F  A++ +          ++ + +   L++ P D+ +  +  +++       AI  
Sbjct: 736  EPAAFACALINSWPMGFYSPDQILQDARRHQLSIRPVDVRASDWDCSLEPMDGRQPAIRM 795

Query: 834  GIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGP 893
            G+  IKG  E     I EA  +   F D+ D   R  L   + R   +L  AGAL  L  
Sbjct: 796  GLCMIKGFREEDARRI-EAARRHRPFSDVADLGERAQL---DARAQAQLADAGALQGL-- 849

Query: 894  HRAAMMASVDDAVRAASQHHQA--EAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLE 951
                           A   H+A  E  G     G+    P + E+    +P+      L 
Sbjct: 850  ---------------AGDRHRARWEVAGVQKQLGLFAGLPCQ-EEPPVALPKPTLGENLF 893

Query: 952  GERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGT 1011
             +  TLG  L  HP+     EL         E       ++++VAGLV   +   T  G 
Sbjct: 894  ADYTTLGTTLGPHPLALLRPELRARRCRSSRELQEVEHGRNVSVAGLVTGRQRPGTASG- 952

Query: 1012 RIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQ 1052
             +  +TL+D  G + V+++ +  +R  + L   ++L V G+
Sbjct: 953  -VTFVTLEDEFGNLNVVVWRDLAERQRKTLVGSQLLKVDGR 992