Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1173 a.a., DNA-directed DNA polymerase III (polc) from Pseudomonas stutzeri RCH2

 Score = 1333 bits (3449), Expect = 0.0
 Identities = 680/1172 (58%), Positives = 864/1172 (73%), Gaps = 23/1172 (1%)

Query: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65
            F+HLR+H+++S+VDGL +V PL+K VAA GMPA+A+TD +N+C LVKFY TA   G+KPI
Sbjct: 5    FVHLRLHTEYSLVDGLVRVKPLIKAVAAGGMPAVAVTDMSNMCSLVKFYKTAQGSGIKPI 64

Query: 66   IGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEHA 125
             GAD  +   +    L++LTLLA N  GY+NLT LIS+ +  G      +I++ W+   A
Sbjct: 65   CGADIWMAGCDEDGPLSRLTLLAMNPKGYRNLTELISRGWTEGQRNDLVIIERDWVKLAA 124

Query: 126  EGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFA 185
            EGLI LSG K GEVG+ALL G++   E  +  ++  FAD FYLE+ RT R ++E +LH A
Sbjct: 125  EGLIALSGAKEGEVGQALLNGDEALAEARLAEWRDVFADRFYLEIQRTSRVNDEEHLHAA 184

Query: 186  LDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAE 245
              +A++   P+VATN+V F+ +E FEAHE RV I +G TL+DPRRP+ YS +QYL++ AE
Sbjct: 185  AALADRTGTPLVATNDVRFLKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQYLKTPAE 244

Query: 246  MCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-GMAIEDFLVMKSREGLEERL 304
            M ELF+D+PEAL N+VEIAKRCN+ V+LG YFLPNFP   GM I+D+L   S EGLEERL
Sbjct: 245  MAELFSDLPEALENTVEIAKRCNIEVQLGTYFLPNFPVPEGMTIDDYLRQVSFEGLEERL 304

Query: 305  EFLFPD--PEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGR 362
            E L P   P+  AK++  Y +RL+ EL  I QMGFPGYFLIVM+FI+W+K+N +PVGPGR
Sbjct: 305  EVLLPKDTPDYEAKKQV-YIDRLEFELGTIIQMGFPGYFLIVMDFIKWAKNNGVPVGPGR 363

Query: 363  GSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMY 422
            GSGAGSLVAY LKITDLDPL YDLLFERFLNPERVSMPDFDVDFCMD RD+VID+VAE Y
Sbjct: 364  GSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVAEAY 423

Query: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPALQ 482
            GR+AVSQIITFGTMAAKAV+RDV RV G  +G  DR+SK++P + GMTLEKA+  E  L+
Sbjct: 424  GRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEMEEPLR 483

Query: 483  ELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQFD 542
            +    DE+ +E+ +    LEG TR  GKHAGGVVI+PT +TDFAPI CD EG   VTQFD
Sbjct: 484  DFLAVDEDAREIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFAPIACDEEGGGLVTQFD 543

Query: 543  KNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQD 602
            K+DVE+AGLVKFDFLGLRTLTII WAL  +N    K G  P+ I+ IPLDD  +++ LQ 
Sbjct: 544  KDDVESAGLVKFDFLGLRTLTIIKWALETINREQAKKGLEPINIDFIPLDDKPTYQLLQK 603

Query: 603  AKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAIS 662
            A+TTAVFQLESRGMKELIK+L+PDC ED+IALVALFRPGPLQSGMVD+FI+RKHGR  +S
Sbjct: 604  AETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAEVS 663

Query: 663  YPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAK 722
            YP   +Q+  L+ +L+PTYGIILYQEQVMQIAQV++GYTLGGADMLRRAMGKKKPEEMAK
Sbjct: 664  YPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAK 723

Query: 723  QRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAEF 782
            QR  F EG   NG+D EL+  IFDLVEKFAGYGFNKSHSAAY LVSYQT WLK HYP+ F
Sbjct: 724  QRGGFIEGCSNNGIDKELSGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPSPF 783

Query: 783  MAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKGVG 842
            MAAV++ADM NT+KVV L++EC++M L + PPD+N   ++F V+D+G IVYG+GA+KGVG
Sbjct: 784  MAAVLSADMHNTDKVVILIEECRSMKLRIDPPDVNVSEFKFTVNDDGRIVYGLGAVKGVG 843

Query: 843  EGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPH-------- 894
            EGP+EAI E R +GG FKDLFDFCARIDLK++NKR +E LI +GALDRLGP+        
Sbjct: 844  EGPVEAIAECRAEGGPFKDLFDFCARIDLKRINKRTLEALIRSGALDRLGPYFFEEAKAY 903

Query: 895  -------RAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPE-EVEQKYTQVPEWPE 946
                   RA ++A++++AV+AA Q  ++   G  D+FG L   PE +V   +    E   
Sbjct: 904  QANIDRNRAVLLAAMEEAVQAAEQTARSAESGHMDLFGGLFAEPEADVYANHRNARELSL 963

Query: 947  KVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMT 1006
            K RL+GE++TLGLYLTGHP+DEY  E+ ++   R+ +  P R +Q  T+AGL++  RVM 
Sbjct: 964  KERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIIDLRPARGEQ--TIAGLIVNLRVMK 1021

Query: 1007 TKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSA 1066
             K+G ++G +TLDDRSGR+E  L++EA +     L+ D ++VV G+VS DDF+GGL++ A
Sbjct: 1022 NKKGDKMGFITLDDRSGRIEASLFAEAFNSAQALLQTDALVVVEGEVSNDDFSGGLRLRA 1081

Query: 1067 REVMDLGSAREKFARGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARAR 1126
            + VM L  AR   A  L + +    +  +     + +   HR G  P+ + Y   DARA 
Sbjct: 1082 KRVMSLEEARTGLAESLRVKVAGEALRGERMRWLAEVCGRHR-GACPITLEYTGRDARAL 1140

Query: 1127 LTLGTEWRVTPSDTLLDELKQLLGHDQVELEF 1158
            L  G EWR+ P+D L+  L+   G D V L++
Sbjct: 1141 LQFGEEWRIDPADNLIQALRDQFGRDNVFLQY 1172