Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1026 a.a., DNA-directed DNA polymerase III (polc) from Pseudomonas stutzeri RCH2

 Score =  343 bits (879), Expect = 5e-98
 Identities = 296/1068 (27%), Positives = 496/1068 (46%), Gaps = 96/1068 (8%)

Query: 5    KFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKP 64
            ++  L   S+FS   G S    L ++    G  A+A+TD  +L G+V+ +  + + G+  
Sbjct: 4    EYAELHCLSNFSFQRGASSARELFERAKRQGYDALAITDECSLAGIVRAWQASKDTGLPL 63

Query: 65   IIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEH 124
            IIG++  ++         KL LL +N  GY+ L  LI++A  R        + +      
Sbjct: 64   IIGSELQIEGGP------KLVLLVENLTGYQALCQLITRARRRAEKGRYQALREDLRDWP 117

Query: 125  AEGLIVL----SGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES 180
             EGL+ +      G   E GR LL   ++++   IE ++                 D+  
Sbjct: 118  LEGLLAIWLPDHDGADAE-GRWLLDRFRERLWLGIELHRG---------------PDDAL 161

Query: 181  YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL 240
             L  +L  A +  +  VA  +V           +   AI     + +  R    + +++L
Sbjct: 162  QLRQSLTQASRLGISAVACGDVHMHARGRRALQDCMTAIRHHLPVAEAGRHLFPNGERHL 221

Query: 241  RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPN-FPTGGMAIEDFLVMKSREG 299
            RS  E+ +L+    E LA ++ I++RC+  +   +Y  P+     G     +L    R+ 
Sbjct: 222  RSREELAQLYP--AELLAETLRISQRCHFQLDQLKYHYPHELVPPGHDTTSWL----RKL 275

Query: 300  LEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVG 359
            +E+   + +PD  +  K R +    L+ EL++I  + +  YFL V + ++++++  I + 
Sbjct: 276  VEDGARWRWPDG-IPEKARAQ----LEHELELIADLHYESYFLTVHDIVRFAREQGI-LC 329

Query: 360  PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 419
             GRGS A S V + L IT+LDP+   LLFERFL+ ER   PD DVDF  D+R++VI +V 
Sbjct: 330  QGRGSAANSSVCFVLGITELDPVRSKLLFERFLSRERNEPPDIDVDFEHDRREEVIQYVF 389

Query: 420  EMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHP-------FGFVDRISKLVPPDPGMTLE 472
            + YGR+  +      +  A   +RDV + LG P        G   R S+ +P D  +   
Sbjct: 390  QRYGRNRAALTAVASSYRATGALRDVAKALGLPPDQINALAGCCGRWSEHIPDDSQLR-- 447

Query: 473  KAFIAEPALQELYDADEEV-KELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCD 531
                     +  +D D  V + ++     L G  R+  +H GG VIS   +    PI   
Sbjct: 448  ---------EAGFDPDNPVLRRVLVLTDALIGFPRHLSQHPGGFVISEQPLDTLVPIENA 498

Query: 532  AEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPL 591
            +  +  V Q+DK+D++  GL+K D L L  L+ I     L+    +        I  +P 
Sbjct: 499  SMADRTVIQWDKDDLDAVGLLKVDVLALGMLSAIRRCFDLI----EHYRGTRWTIATLPA 554

Query: 592  DDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNF 651
            +D  ++  +  A T  VFQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q  MV  +
Sbjct: 555  EDKPTYEMISRADTIGVFQIESRAQMAMLPRLRPKTFYDLVIQVAIVRPGPIQGDMVHPY 614

Query: 652  IDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRA 711
            + R++  E + YP E+     LK + E T G+ L+QEQVM++A V + YT   AD LRRA
Sbjct: 615  LRRRNKEEDVDYPSEE-----LKPVFERTLGVPLFQEQVMELAIVAAEYTPDEADKLRRA 669

Query: 712  MGK-KKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770
            M   K+   +   R    E     G   +   +IF+ ++ F  YGF +SH+A++AL++Y 
Sbjct: 670  MAAWKRHGSLEPHRVRLTERMLAKGYQPDFIARIFEQIKGFGSYGFPESHAASFALLTYA 729

Query: 771  TLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVD---- 826
            + WLK H PA F  A++ +          ++ + +  GL + P D+    +  +++    
Sbjct: 730  SCWLKRHEPAAFACALINSWPMGFYNPDQILQDARRHGLEIRPVDVRHSGWDCSLEPCSQ 789

Query: 827  DNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAG 886
            +  AI  G+  ++   E     I  AR +   F ++ D C R +L+    R  E+L  AG
Sbjct: 790  EQPAIRLGLRMVRSFREADARRIEAARQRQP-FTNIHDLCLRAELE---PRAREQLADAG 845

Query: 887  ALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPE 946
             L  L  HR     +V            A    Q  +F  L       E+    +P    
Sbjct: 846  VLRGLAGHRHRARWAV------------AGVEPQLPLFASL----PATEETPINLPLPSV 889

Query: 947  KVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLN-EAAPTRRDQSLTVAGLVIAARVM 1005
               L  +  TLG  L  HP+   L++  K   CR + E A     + +++AGLVI  +  
Sbjct: 890  SEDLLNDYATLGTTLGPHPL-ALLRDELKARRCRSSRELAMIEHGRPVSIAGLVIGRQRP 948

Query: 1006 TTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQV 1053
             T  G  +  +TL+D  G + V+++ +  +R    L + ++L V G +
Sbjct: 949  QTASG--VIFVTLEDEFGMVNVVVWRDLAERQRRPLIQSQLLRVDGHL 994