Pairwise Alignments

Query, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 1094 a.a., DNA polymerase from Azospirillum brasilense Sp245

 Score =  351 bits (900), Expect = e-100
 Identities = 294/1092 (26%), Positives = 510/1092 (46%), Gaps = 98/1092 (8%)

Query: 6    FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65
            +  L++ + F+ ++G S    L    A++G  A+A+TD  +L G+V+ ++ A   G++ I
Sbjct: 4    YAELQVSTSFTFLEGASHPDELALTAASLGHAAVAVTDRNSLAGVVQAHAAARKHGLRLI 63

Query: 66   IGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEHA 125
            +G    L   +       L     +   Y  L+ L++    R   +    I +A +++HA
Sbjct: 64   VGCRLDLTDAD------SLLAYPTDRAAYARLSRLLTLGKRRAP-KGACFITRADVLDHA 116

Query: 126  EGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFA 185
            EG++ L                       +  ++    D  +L      R D++  L + 
Sbjct: 117  EGMLFLLVPPDNR---------DPAFVHALRGWRNDLGDRLHLAASHRYRGDDQRRLSWL 167

Query: 186  LDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAE 245
              +AE   +P+VATN+V++ T       ++   I  G T+++     + + +++L++  E
Sbjct: 168  AGLAEAERVPLVATNDVLYHTPARRPLADVMTCIRSGTTIDEAGWRLSANAERHLKAGVE 227

Query: 246  MCELFADIPEALANSVEIAKRCNVTVRLGEYFLPN-FPTGGMAIEDFLVMKSREGLEERL 304
            M  LF   P+A+A +VEIA  C  ++    Y  P+     G + ++ L   +  G  +R 
Sbjct: 228  MARLFHRHPDAVARTVEIAAACRFSLEELRYEYPDEVAEDGRSPQETLTNLTWAGAVQR- 286

Query: 305  EFLFPD--PEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGR 362
               +PD  PE  A       + L  EL +I ++ +  YFL V + ++ ++  DI +  GR
Sbjct: 287  ---YPDGVPETVA-------QTLHRELALIGRLDYAPYFLTVHDIVRHARSQDI-LCQGR 335

Query: 363  GSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMY 422
            GS A S V Y L IT +DP    LLFERF++  R   PD DVDF  +KR++VI ++ E Y
Sbjct: 336  GSAANSAVCYCLGITSVDPATTRLLFERFISSARNEPPDIDVDFEHEKREKVIQYIYEKY 395

Query: 423  GRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPALQ 482
            GR+      T     A+  IR+VG+ +G     V R+S  V              E A Q
Sbjct: 396  GRERAGLTATVIRYRARGAIREVGKAMGLSADLVARLSSSV----WGWSRHGVDGERARQ 451

Query: 483  ELYDADE-EVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQF 541
              +D D+  +++ ++  + L G  R+  +H GG VI+   ++D  PI   A  +    ++
Sbjct: 452  YGFDPDDPRLRQTLELAQELIGFPRHLSQHVGGFVITRGPLSDLCPIANAAMKDRTTIEW 511

Query: 542  DKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRNLQ 601
            DK+D++  G++K D L L  LT +     L    LK+     + +  +P  D  ++  L 
Sbjct: 512  DKDDIDALGILKVDVLALGMLTCLHRGFDL----LKQHYDSDLTLATVPQGDPATYDMLC 567

Query: 602  DAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAI 661
             A +  VFQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q  MV  ++ R+ G E +
Sbjct: 568  RADSLGVFQVESRAQMSMLPRLRPKKFYDLVIQVAIVRPGPIQGDMVHPYLRRRSGEEVV 627

Query: 662  SYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEM 720
            +YP      + L+ +L+ T G+ L+QEQ MQIA V +G++   AD LRRAM   +K  E+
Sbjct: 628  TYPS-----KDLEAVLDRTLGVPLFQEQAMQIAIVGAGFSAEDADRLRRAMATFRKTGEV 682

Query: 721  AKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA 780
               R  F EG      D   A + F  +E F  YGF +SH+A++AL++Y + W+K H+P 
Sbjct: 683  QLFRDRFIEGMVGKDYDRAFAERCFQQIEGFGEYGFPESHAASFALLAYVSAWMKCHHPD 742

Query: 781  EFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKG 840
             F AA++ +          +V + +  G+ VLPPD+N+  +   ++          +  G
Sbjct: 743  VFAAALLNSQPMGFYAPAQIVRDAREHGVIVLPPDVNASDWDCTLEPLSKTETHTLSPLG 802

Query: 841  VGEGPIEAIL----------------EARNKGGYFKDLFDFCARIDLKKVNKRVIEKLIL 884
             GEG  +A +                E R   G  +       R+ ++ +++    +L+L
Sbjct: 803  RGEGEGDAHVPNVPEQRIPLTPTLSPEGRGSTGNIRHALRLGLRL-VRGMDEEDAHQLVL 861

Query: 885  ---AGALDRLGPHRAAMM-------ASVDDAVRAASQHHQA-----EAFG--QADMFGVL 927
               AG  D     R A M        +  DA R+     +A     +A G     +F  L
Sbjct: 862  CRGAGYRDPYDLWRRARMPVSGLERLAKADAFRSVGLDRRAALWAVKALGAQPLPLFAGL 921

Query: 928  TDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPT 987
             D+ ++  Q         E V +  +  +L L L  HP+   L++            APT
Sbjct: 922  ADSAQDEPQALLPAMALGEHVVM--DYGSLCLSLKAHPM-ALLRD-------GFAGVAPT 971

Query: 988  RR------DQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWL 1041
             R         LTVAGL +  +   +  G  +  +TL+D +G   +++  +  +++ + +
Sbjct: 972  ERLGKVRAGTRLTVAGLALVRQRPGSAEG--VVFITLEDETGIANLVIMPDVFEQFRKAI 1029

Query: 1042 EKDKILVVSGQV 1053
               +++  +G+V
Sbjct: 1030 IGARLIAATGRV 1041